Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA3Q9Y5H8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHA3Q9Y5H8 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDHA3Q9Y5H8 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 AC026271.2-201ENST00000428091 497 ntBASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 CYP2T1P-201ENST00000432607 1285 ntBASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 AC069236.1-201ENST00000604339 616 ntBASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 AP001271.2-201ENST00000624018 1556 ntBASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA3Q9Y5H8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 AL355472.2-201ENST00000422958 438 ntBASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDHA3Q9Y5H8 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDHA3Q9Y5H8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms