Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.482e-6■■■□□ 17.8
SUB1P53999 HK2-202ENST00000409174 5278 ntTSL 1 (best) BASIC9.67□□□□□ -0.862e-6■■■□□ 17.8
SUB1P53999 TPRA1-203ENST00000393400 1831 ntTSL 1 (best)22.17■■□□□ 1.149e-7■■■□□ 17.8
SUB1P53999 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.55■■□□□ 1.049e-7■■■□□ 17.8
SUB1P53999 TPRA1-208ENST00000483868 1720 ntTSL 521.46■■□□□ 1.039e-7■■■□□ 17.8
SUB1P53999 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.989e-7■■■□□ 17.8
SUB1P53999 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.979e-7■■■□□ 17.8
SUB1P53999 PKD1-221ENST00000488185 737 ntTSL 515.34■□□□□ 0.059e-7■■■□□ 17.8
SUB1P53999 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -09e-7■■■□□ 17.8
SUB1P53999 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.069e-7■■■□□ 17.8
SUB1P53999 PKD1-235ENST00000568591 2545 ntTSL 214.65□□□□□ -0.069e-7■■■□□ 17.8
SUB1P53999 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.099e-7■■■□□ 17.8
SUB1P53999 SHMT2-225ENST00000556798 525 ntTSL 213.41□□□□□ -0.269e-7■■■□□ 17.8
SUB1P53999 TMEM94-232ENST00000585105 5632 ntTSL 212.95□□□□□ -0.349e-7■■■□□ 17.8
SUB1P53999 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC11.46□□□□□ -0.579e-7■■■□□ 17.8
SUB1P53999 TMEM94-217ENST00000581085 5432 ntTSL 211.38□□□□□ -0.599e-7■■■□□ 17.8
SUB1P53999 TMEM94-201ENST00000314256 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.639e-7■■■□□ 17.8
SUB1P53999 TMEM94-208ENST00000578853 905 ntTSL 310.98□□□□□ -0.659e-7■■■□□ 17.8
SUB1P53999 DNA2-206ENST00000550357 543 ntTSL 410.86□□□□□ -0.679e-7■■■□□ 17.8
SUB1P53999 TMEM94-228ENST00000583296 569 ntTSL 210.72□□□□□ -0.699e-7■■■□□ 17.8
SUB1P53999 SHMT2-229ENST00000557348 1659 ntTSL 210.22□□□□□ -0.779e-7■■■□□ 17.8
SUB1P53999 EIF3K-210ENST00000591409 583 ntTSL 310.04□□□□□ -0.89e-7■■■□□ 17.8
SUB1P53999 TMEM94-202ENST00000375248 4703 ntTSL 2 BASIC9.66□□□□□ -0.869e-7■■■□□ 17.8
SUB1P53999 TMEM94-227ENST00000583071 581 ntTSL 39.5□□□□□ -0.899e-7■■■□□ 17.8
SUB1P53999 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC9.43□□□□□ -0.99e-7■■■□□ 17.8
SUB1P53999 TMEM94-207ENST00000578624 583 ntTSL 49.2□□□□□ -0.949e-7■■■□□ 17.8
SUB1P53999 TMEM94-209ENST00000579208 3543 ntTSL 5 BASIC9.17□□□□□ -0.949e-7■■■□□ 17.8
SUB1P53999 TMEM94-216ENST00000580918 769 ntTSL 38.71□□□□□ -1.029e-7■■■□□ 17.8
SUB1P53999 GTF2H4-206ENST00000487746 1126 ntTSL 58.59□□□□□ -1.039e-7■■■□□ 17.8
SUB1P53999 TMEM94-226ENST00000582843 570 ntTSL 48□□□□□ -1.139e-7■■■□□ 17.8
SUB1P53999 PPA1-205ENST00000610026 3524 ntTSL 26.44□□□□□ -1.389e-7■■■□□ 17.8
SUB1P53999 MCM7-211ENST00000491245 648 ntTSL 1 (best)6.43□□□□□ -1.389e-7■■■□□ 17.8
SUB1P53999 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.49e-7■■■□□ 17.8
SUB1P53999 DNA2-202ENST00000399179 3207 ntTSL 25.8□□□□□ -1.489e-7■■■□□ 17.8
SUB1P53999 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC5.8□□□□□ -1.489e-7■■■□□ 17.8
SUB1P53999 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC5.54□□□□□ -1.529e-7■■■□□ 17.8
SUB1P53999 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.569e-7■■■□□ 17.8
SUB1P53999 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.759e-7■■■□□ 17.8
SUB1P53999 EMD-205ENST00000471965 800 ntTSL 217.57■□□□□ 0.43e-12■■■□□ 17.8
SUB1P53999 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.173e-12■■■□□ 17.8
SUB1P53999 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.679e-7■■■□□ 17.8
SUB1P53999 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC10.62□□□□□ -0.719e-7■■■□□ 17.8
SUB1P53999 TMOD1-203ENST00000395211 3259 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.219e-7■■■□□ 17.8
SUB1P53999 EI24-208ENST00000529812 493 ntTSL 418.94■□□□□ 0.629e-13■■■□□ 17.8
SUB1P53999 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC8.95□□□□□ -0.987e-18■■■□□ 17.7
SUB1P53999 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.28■□□□□ 0.27e-16■■■□□ 17.7
SUB1P53999 IDH3B-208ENST00000479376 436 ntTSL 28.89□□□□□ -0.999e-7■■■□□ 17.7
SUB1P53999 EIF3K-213ENST00000593149 760 ntTSL 2 BASIC8.85□□□□□ -0.999e-7■■■□□ 17.7
SUB1P53999 EIF3K-214ENST00000614624 780 ntTSL 1 (best) BASIC8.06□□□□□ -1.129e-7■■■□□ 17.7
SUB1P53999 EIF3K-208ENST00000588934 501 ntTSL 3 BASIC7.52□□□□□ -1.219e-7■■■□□ 17.7
SUB1P53999 EIF3K-201ENST00000248342 864 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.269e-7■■■□□ 17.7
SUB1P53999 EIF3K-211ENST00000592558 670 ntTSL 2 BASIC7□□□□□ -1.299e-7■■■□□ 17.7
SUB1P53999 EIF3K-209ENST00000590134 711 ntTSL 26.42□□□□□ -1.389e-7■■■□□ 17.7
SUB1P53999 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.223e-16■■■□□ 17.7
SUB1P53999 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.093e-16■■■□□ 17.7
SUB1P53999 NSUN5-206ENST00000471461 2286 ntTSL 214.16□□□□□ -0.143e-16■■■□□ 17.7
SUB1P53999 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.323e-16■■■□□ 17.7
SUB1P53999 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.383e-16■■■□□ 17.7
SUB1P53999 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.254e-6■■■□□ 17.7
SUB1P53999 AP000781.2-203ENST00000528835 533 ntTSL 312.88□□□□□ -0.354e-6■■■□□ 17.7
SUB1P53999 AP000781.2-201ENST00000534081 1639 ntTSL 210.92□□□□□ -0.664e-6■■■□□ 17.7
SUB1P53999 SLC43A3-202ENST00000395123 2619 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.874e-6■■■□□ 17.7
SUB1P53999 SLC43A3-201ENST00000352187 2595 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.024e-6■■■□□ 17.7
SUB1P53999 AP000781.2-202ENST00000529411 681 ntAPPRIS P1 TSL 4 BASIC7.51□□□□□ -1.214e-6■■■□□ 17.7
SUB1P53999 SLC43A3-226ENST00000625097 1796 nt6.24□□□□□ -1.414e-6■■■□□ 17.7
SUB1P53999 NARS-204ENST00000586807 1608 ntTSL 29.44□□□□□ -0.92e-6■■■□□ 17.7
SUB1P53999 UBR4-201ENST00000375218 4031 ntTSL 2 BASIC7.48□□□□□ -1.212e-7■■■□□ 17.7
SUB1P53999 CLNS1A-209ENST00000527299 387 ntTSL 22.72□□□□□ -1.974e-6■■■□□ 17.7
SUB1P53999 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.221e-6■■■□□ 17.7
SUB1P53999 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.081e-6■■■□□ 17.7
SUB1P53999 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.081e-6■■■□□ 17.7
SUB1P53999 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.351e-8■■■□□ 17.7
SUB1P53999 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.41e-8■■■□□ 17.7
SUB1P53999 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.179e-7■■■□□ 17.7
SUB1P53999 CKB-206ENST00000553994 746 ntTSL 222.33■■□□□ 1.179e-7■■■□□ 17.7
SUB1P53999 CKB-205ENST00000553878 856 ntTSL 222.33■■□□□ 1.179e-7■■■□□ 17.7
SUB1P53999 HLA-C-208ENST00000487245 1880 nt21.09■□□□□ 0.979e-7■■■□□ 17.7
SUB1P53999 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.759e-7■■■□□ 17.7
SUB1P53999 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.689e-7■■■□□ 17.7
SUB1P53999 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.03■□□□□ 0.649e-7■■■□□ 17.7
SUB1P53999 CKB-214ENST00000555770 816 ntTSL 418.78■□□□□ 0.69e-7■■■□□ 17.7
SUB1P53999 NOP16-204ENST00000504821 544 ntTSL 518.73■□□□□ 0.599e-7■■■□□ 17.7
SUB1P53999 CKB-208ENST00000554426 775 ntTSL 518.63■□□□□ 0.579e-7■■■□□ 17.7
SUB1P53999 HLA-C-202ENST00000376237 1538 nt18.05■□□□□ 0.489e-7■■■□□ 17.7
SUB1P53999 CAPRIN1-205ENST00000528856 595 ntTSL 517.89■□□□□ 0.459e-7■■■□□ 17.7
SUB1P53999 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC17.84■□□□□ 0.459e-7■■■□□ 17.7
SUB1P53999 CD151-210ENST00000526661 894 ntTSL 217.82■□□□□ 0.449e-7■■■□□ 17.7
SUB1P53999 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.419e-7■■■□□ 17.7
SUB1P53999 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.419e-7■■■□□ 17.7
SUB1P53999 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.399e-7■■■□□ 17.7
SUB1P53999 AC138932.1-201ENST00000534164 6830 ntBASIC17.14■□□□□ 0.339e-7■■■□□ 17.7
SUB1P53999 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.319e-7■■■□□ 17.7
SUB1P53999 CD151-220ENST00000532045 1803 ntTSL 516.9■□□□□ 0.39e-7■■■□□ 17.7
SUB1P53999 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.83■□□□□ 0.289e-7■■■□□ 17.7
SUB1P53999 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.239e-7■■■□□ 17.7
SUB1P53999 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.239e-7■■■□□ 17.7
SUB1P53999 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.219e-7■■■□□ 17.7
SUB1P53999 PKD1-218ENST00000485120 696 ntTSL 315.91■□□□□ 0.149e-7■■■□□ 17.7
SUB1P53999 NOP16-201ENST00000502577 513 ntTSL 315.84■□□□□ 0.139e-7■■■□□ 17.7
SUB1P53999 NOP16-203ENST00000503849 582 ntTSL 215.84■□□□□ 0.139e-7■■■□□ 17.7
Retrieved 100 of 11,644 protein–RNA pairs in 241.1 ms