RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-209ENST00000527299 AEBP2Q6ZN18 517 aaPredicted RBP22.67■■□□□ 1.22
CLNS1A-209ENST00000527299 CHIC1Q5VXU3 224 aa21.34■■□□□ 1.01
CLNS1A-209ENST00000527299 SENP3Q9H4L4 574 aaPredicted RBP19.36■□□□□ 0.69
CLNS1A-209ENST00000527299 PHF23Q9BUL5 403 aaPredicted RBP19.09■□□□□ 0.65
CLNS1A-209ENST00000527299 FOXD1Q16676 465 aa18.08■□□□□ 0.48
CLNS1A-209ENST00000527299 MSH5O43196 834 aa16.98■□□□□ 0.31
CLNS1A-209ENST00000527299 PLPPR3Q6T4P5 718 aa16.95■□□□□ 0.3
CLNS1A-209ENST00000527299 POTEDQ86YR6 584 aa16.92■□□□□ 0.3
CLNS1A-209ENST00000527299 PIAS4Q8N2W9 510 aaPredicted RBP16.82■□□□□ 0.28
CLNS1A-209ENST00000527299 PPP6R1Q9UPN7 881 aa16.76■□□□□ 0.27
CLNS1A-209ENST00000527299 ADRA2BP18089 450 aa16.67■□□□□ 0.26
CLNS1A-209ENST00000527299 MAPK8IP2Q13387 824 aaPredicted RBP15.37■□□□□ 0.05
CLNS1A-209ENST00000527299 DMRT2Q9Y5R5 561 aa15.33■□□□□ 0.04
CLNS1A-209ENST00000527299 SCAF1Q9H7N4 1312 aaKnown RBP15.25■□□□□ 0.03
CLNS1A-209ENST00000527299 PPP4R3CPQ6ZMV5 832 aa14.84□□□□□ -0.03
CLNS1A-209ENST00000527299 HOXD11P31277 338 aaPredicted RBP14.7□□□□□ -0.06
CLNS1A-209ENST00000527299 CACNB1Q02641 598 aaPredicted RBP14.67□□□□□ -0.06
CLNS1A-209ENST00000527299 DCAF8L1A6NGE4 600 aa14.65□□□□□ -0.06
CLNS1A-209ENST00000527299 CNKSR2Q8WXI2 1034 aa14.61□□□□□ -0.07
CLNS1A-209ENST00000527299 RNF216Q9NWF9 866 aaPredicted RBP14.53□□□□□ -0.08
CLNS1A-209ENST00000527299 RNF39Q9H2S5 420 aa14.48□□□□□ -0.09
CLNS1A-209ENST00000527299 C1QBPQ07021 282 aaKnown RBP14.26□□□□□ -0.13
CLNS1A-209ENST00000527299 DNAJC5BQ9UF47 199 aa14.26□□□□□ -0.13
CLNS1A-209ENST00000527299 NCBP3Q53F19 620 aaKnown RBP14.19□□□□□ -0.14
CLNS1A-209ENST00000527299 NPM3O75607 178 aaKnown RBP14□□□□□ -0.17
CLNS1A-209ENST00000527299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.96□□□□□ -0.172e-8■■■□□ 17.4
CLNS1A-209ENST00000527299 U3KPZ7 1027 aaPredicted RBP13.67□□□□□ -0.22
CLNS1A-209ENST00000527299 KCNA4P22459 653 aa13.55□□□□□ -0.24
CLNS1A-209ENST00000527299 SPINK5Q9NQ38 1064 aaPredicted RBP13.53□□□□□ -0.24
CLNS1A-209ENST00000527299 DSG3P32926 999 aa13.49□□□□□ -0.25
CLNS1A-209ENST00000527299 CAPN15O75808 1086 aa13.48□□□□□ -0.25
CLNS1A-209ENST00000527299 SLC4A2P04920 1241 aa13.43□□□□□ -0.26
CLNS1A-209ENST00000527299 APLP2Q06481 763 aa13.25□□□□□ -0.29
CLNS1A-209ENST00000527299 TRHP20396 242 aaPredicted RBP13.23□□□□□ -0.29
CLNS1A-209ENST00000527299 POTEHQ6S545 545 aa13.21□□□□□ -0.29
CLNS1A-209ENST00000527299 ZNF219Q9P2Y4 722 aaPredicted RBP13.21□□□□□ -0.29
CLNS1A-209ENST00000527299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.2□□□□□ -0.3
CLNS1A-209ENST00000527299 HNRNPUL2Q1KMD3 747 aaKnown RBP13.2□□□□□ -0.3
CLNS1A-209ENST00000527299 ABCB7O75027 752 aa13.16□□□□□ -0.3
CLNS1A-209ENST00000527299 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
CLNS1A-209ENST00000527299 MYCNP04198 464 aaPredicted RBP12.95□□□□□ -0.34
CLNS1A-209ENST00000527299 RBM42Q9BTD8 480 aaKnown RBP12.86□□□□□ -0.35
CLNS1A-209ENST00000527299 POLA2Q14181 598 aa12.84□□□□□ -0.35
CLNS1A-209ENST00000527299 SLC4A1APQ9BWU0 796 aaKnown RBP12.73□□□□□ -0.37
CLNS1A-209ENST00000527299 FOXD4L1Q9NU39 408 aa12.7□□□□□ -0.38
CLNS1A-209ENST00000527299 ATF5Q9Y2D1 282 aaPredicted RBP12.68□□□□□ -0.38
CLNS1A-209ENST00000527299 CHRDL2Q6WN34 429 aa12.66□□□□□ -0.38
CLNS1A-209ENST00000527299 ZBTB12Q9Y330 459 aaPredicted RBP12.57□□□□□ -0.4
CLNS1A-209ENST00000527299 AKT1S1Q96B36 256 aa12.54□□□□□ -0.4
CLNS1A-209ENST00000527299 ZBTB22O15209 634 aa12.47□□□□□ -0.41
CLNS1A-209ENST00000527299 OSCARQ8IYS5 282 aa12.43□□□□□ -0.42
CLNS1A-209ENST00000527299 REM2Q8IYK8 340 aaPredicted RBP12.42□□□□□ -0.42
CLNS1A-209ENST00000527299 ATXN8OSP0DMR3 200 aa12.36□□□□□ -0.43
CLNS1A-209ENST00000527299 PIP4P2Q8N4L2 257 aa12.33□□□□□ -0.44
CLNS1A-209ENST00000527299 PITPNM1O00562 1244 aa12.29□□□□□ -0.44
CLNS1A-209ENST00000527299 SP7Q8TDD2 431 aaPredicted RBP12.29□□□□□ -0.44
CLNS1A-209ENST00000527299 FXR2P51116 673 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLNS1A-209ENST00000527299 SPDYE2BA6NHP3 402 aa12.18□□□□□ -0.46
CLNS1A-209ENST00000527299 SPDYE6P0CI01 402 aa12.18□□□□□ -0.46
CLNS1A-209ENST00000527299 SPDYE2Q495Y8 402 aa12.18□□□□□ -0.46
CLNS1A-209ENST00000527299 FBLN2P98095 1184 aa12.17□□□□□ -0.46
CLNS1A-209ENST00000527299 HAX1O00165 279 aa12.13□□□□□ -0.47
CLNS1A-209ENST00000527299 MKRN4PQ13434 485 aaPredicted RBP12.08□□□□□ -0.48
CLNS1A-209ENST00000527299 EVX2Q03828 476 aa12□□□□□ -0.49
CLNS1A-209ENST00000527299 SPDYE1Q8NFV5 336 aaPredicted RBP12□□□□□ -0.49
CLNS1A-209ENST00000527299 SSUH2Q9Y2M2 353 aa12□□□□□ -0.49
CLNS1A-209ENST00000527299 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
CLNS1A-209ENST00000527299 CLEC11AQ9Y240 323 aa11.97□□□□□ -0.49
CLNS1A-209ENST00000527299 PRKAR2AP13861 404 aaKnown RBP11.95□□□□□ -0.5
CLNS1A-209ENST00000527299 C19orf67A6NJJ6 358 aa11.85□□□□□ -0.51
CLNS1A-209ENST00000527299 PABPN1Q86U42 306 aaKnown RBP eCLIP11.79□□□□□ -0.52
CLNS1A-209ENST00000527299 CHADLQ6NUI6 762 aa11.77□□□□□ -0.53
CLNS1A-209ENST00000527299 PRR29P0C7W0 189 aa11.76□□□□□ -0.53
CLNS1A-209ENST00000527299 CSRNP3Q8WYN3 585 aa11.72□□□□□ -0.53
CLNS1A-209ENST00000527299 GABBR2O75899 941 aa11.71□□□□□ -0.53
CLNS1A-209ENST00000527299 FARP1Q9Y4F1 1045 aaPredicted RBP11.59□□□□□ -0.55
CLNS1A-209ENST00000527299 CD44P16070 742 aaKnown RBP11.56□□□□□ -0.56
CLNS1A-209ENST00000527299 LHX8Q68G74 356 aa11.53□□□□□ -0.56
CLNS1A-209ENST00000527299 CLCN6P51797 869 aa11.49□□□□□ -0.57
CLNS1A-209ENST00000527299 POTEIP0CG38 1075 aa11.47□□□□□ -0.57
CLNS1A-209ENST00000527299 STAG3Q9UJ98 1225 aa11.45□□□□□ -0.58
CLNS1A-209ENST00000527299 CREBZFQ9NS37 354 aa11.44□□□□□ -0.58
CLNS1A-209ENST00000527299 EHMT2Q96KQ7 1210 aa11.4□□□□□ -0.58
CLNS1A-209ENST00000527299 SPDYE4A6NLX3 237 aa11.39□□□□□ -0.59
CLNS1A-209ENST00000527299 ZNF579Q8NAF0 562 aaKnown RBP11.39□□□□□ -0.59
CLNS1A-209ENST00000527299 ZRANB1Q9UGI0 708 aa11.37□□□□□ -0.59
CLNS1A-209ENST00000527299 DCBLD2Q96PD2 775 aa11.33□□□□□ -0.6
CLNS1A-209ENST00000527299 GALR2O43603 387 aaPredicted RBP11.26□□□□□ -0.61
CLNS1A-209ENST00000527299 MNX1P50219 401 aaPredicted RBP11.24□□□□□ -0.61
CLNS1A-209ENST00000527299 PAK3O75914 559 aaPredicted RBP11.22□□□□□ -0.61
CLNS1A-209ENST00000527299 NPM1P06748 294 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLNS1A-209ENST00000527299 PHF12Q96QT6 1004 aa11.19□□□□□ -0.62
CLNS1A-209ENST00000527299 PROM2Q8N271 834 aa11.14□□□□□ -0.63
CLNS1A-209ENST00000527299 POTEB2H3BUK9 544 aa11.09□□□□□ -0.63
CLNS1A-209ENST00000527299 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
CLNS1A-209ENST00000527299 PELP1Q8IZL8 1130 aaKnown RBP11.07□□□□□ -0.64
CLNS1A-209ENST00000527299 MS4A3Q96HJ5 214 aa11.04□□□□□ -0.64
CLNS1A-209ENST00000527299 ASTLQ6HA08 431 aaPredicted RBP11.03□□□□□ -0.64
CLNS1A-209ENST00000527299 ATMINO43313 823 aaPredicted RBP11□□□□□ -0.65
CLNS1A-209ENST00000527299 TSPYL2Q9H2G4 693 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms