RNA–Protein interactions for RNA: ENST00000568591.5

PKD1-235, Transcript of polycystin 1, transient receptor potential channel interacting, humanhuman

TSL 2

Gene PKD1, Length 2,545 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKD1-235ENST00000568591 NISCHQ9Y2I1 1504 aa37.33■■■■□ 3.57
PKD1-235ENST00000568591 SHROOM4Q9ULL8 1493 aa32.38■■■□□ 2.77
PKD1-235ENST00000568591 SUPT5HO00267 1087 aaKnown RBP31.83■■■□□ 2.69
PKD1-235ENST00000568591 ZCCHC6Q5VYS8 1495 aaKnown RBP31.62■■■□□ 2.65
PKD1-235ENST00000568591 CCDC180Q9P1Z9 1646 aa31.42■■■□□ 2.62
PKD1-235ENST00000568591 DCAF8L2P0C7V8 631 aa31.22■■■□□ 2.59
PKD1-235ENST00000568591 MYO15BQ96JP2 1530 aa31■■■□□ 2.55
PKD1-235ENST00000568591 CHIC1Q5VXU3 224 aa30.95■■■□□ 2.54
PKD1-235ENST00000568591 DCAF1Q9Y4B6 1507 aa30.43■■■□□ 2.46
PKD1-235ENST00000568591 HRCP23327 699 aa30.39■■■□□ 2.46
PKD1-235ENST00000568591 PCGF6Q9BYE7 350 aa30.35■■■□□ 2.45
PKD1-235ENST00000568591 LOC105371045A0A1W2PR82 267 aa30.21■■■□□ 2.43
PKD1-235ENST00000568591 PPARGC1BQ86YN6 1023 aaKnown RBP29.99■■■□□ 2.39
PKD1-235ENST00000568591 ABCC9O60706 1549 aa29.87■■■□□ 2.37
PKD1-235ENST00000568591 SCRIBQ14160 1630 aa29.81■■■□□ 2.36
PKD1-235ENST00000568591 RSF1Q96T23 1441 aaPredicted RBP29.73■■■□□ 2.35
PKD1-235ENST00000568591 TRIM26Q12899 539 aaPredicted RBP29.52■■■□□ 2.32
PKD1-235ENST00000568591 RB1CC1Q8TDY2 1594 aa29.51■■■□□ 2.31
PKD1-235ENST00000568591 TRIM41Q8WV44 630 aa29.48■■■□□ 2.31
PKD1-235ENST00000568591 FAM9AQ8IZU1 332 aaPredicted RBP29.46■■■□□ 2.31
PKD1-235ENST00000568591 EHMT2Q96KQ7 1210 aa29.36■■■□□ 2.29
PKD1-235ENST00000568591 CECR2Q9BXF3 1484 aa29.29■■■□□ 2.28
PKD1-235ENST00000568591 MROH2BQ7Z745 1585 aa29.15■■■□□ 2.26
PKD1-235ENST00000568591 NACADO15069 1562 aa29.05■■■□□ 2.24
PKD1-235ENST00000568591 WIZO95785 1651 aa29.01■■■□□ 2.23
PKD1-235ENST00000568591 ZEB1P37275 1124 aaPredicted RBP28.82■■■□□ 2.2
PKD1-235ENST00000568591 BAZ1AQ9NRL2 1556 aaPredicted RBP28.7■■■□□ 2.18
PKD1-235ENST00000568591 EIF4G1Q04637 1599 aaKnown RBP28.63■■■□□ 2.17
PKD1-235ENST00000568591 ABCC8Q09428 1581 aa28.53■■■□□ 2.16
PKD1-235ENST00000568591 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.5■■■□□ 2.15
PKD1-235ENST00000568591 CCDC88BA6NC98 1476 aa28.47■■■□□ 2.15
PKD1-235ENST00000568591 TTBK1Q5TCY1 1321 aaPredicted RBP28.45■■■□□ 2.14
PKD1-235ENST00000568591 TOP2AP11388 1531 aaKnown RBP28.41■■■□□ 2.14
PKD1-235ENST00000568591 SMARCA4P51532 1647 aa28.37■■■□□ 2.13
PKD1-235ENST00000568591 SMARCA2P51531 1590 aa28.34■■■□□ 2.13
PKD1-235ENST00000568591 CCER1Q8TC90 406 aaPredicted RBP28.32■■■□□ 2.12
PKD1-235ENST00000568591 SOGA1O94964 1423 aa28.32■■■□□ 2.12
PKD1-235ENST00000568591 SCAF1Q9H7N4 1312 aaKnown RBP28.28■■■□□ 2.12
PKD1-235ENST00000568591 UNC13AQ9UPW8 1703 aa28.24■■■□□ 2.11
PKD1-235ENST00000568591 CEP162Q5TB80 1403 aa28.22■■■□□ 2.11
PKD1-235ENST00000568591 RUSC2Q8N2Y8 1516 aa28.21■■■□□ 2.11
PKD1-235ENST00000568591 PABPN1Q86U42 306 aaKnown RBP eCLIP28.16■■■□□ 2.1
PKD1-235ENST00000568591 WRNQ14191 1432 aaPredicted RBP eCLIP28.12■■■□□ 2.09
PKD1-235ENST00000568591 CSRNP3Q8WYN3 585 aa28.08■■■□□ 2.09
PKD1-235ENST00000568591 UBTFP17480 764 aaKnown RBP28.08■■■□□ 2.08
PKD1-235ENST00000568591 TNIKQ9UKE5 1360 aa28.07■■■□□ 2.08
PKD1-235ENST00000568591 BICRAQ9NZM4 1560 aa27.91■■■□□ 2.06
PKD1-235ENST00000568591 EEA1Q15075 1411 aa27.9■■■□□ 2.06
PKD1-235ENST00000568591 DIEXFQ68CQ4 756 aaKnown RBP27.89■■■□□ 2.06
PKD1-235ENST00000568591 NEUROD1Q13562 356 aa27.87■■■□□ 2.05
PKD1-235ENST00000568591 GOLGA3Q08378 1498 aa27.86■■■□□ 2.05
PKD1-235ENST00000568591 ACIN1Q9UKV3 1341 aaKnown RBP27.81■■■□□ 2.04
PKD1-235ENST00000568591 SYNJ1O43426 1573 aa27.79■■■□□ 2.04
PKD1-235ENST00000568591 PEG3Q9GZU2 1588 aa27.71■■■□□ 2.03
PKD1-235ENST00000568591 HNRNPUL2Q1KMD3 747 aaKnown RBP27.7■■■□□ 2.02
PKD1-235ENST00000568591 RANGAP1P46060 587 aaPredicted RBP27.68■■■□□ 2.02
PKD1-235ENST00000568591 CEP164Q9UPV0 1460 aa27.65■■■□□ 2.02
PKD1-235ENST00000568591 PELP1Q8IZL8 1130 aaKnown RBP27.65■■■□□ 2.02
PKD1-235ENST00000568591 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
PKD1-235ENST00000568591 CLIP1P30622 1438 aa27.62■■■□□ 2.01
PKD1-235ENST00000568591 GTF3C3Q9Y5Q9 886 aa27.58■■■□□ 2
PKD1-235ENST00000568591 KIF21BO75037 1637 aa27.58■■■□□ 2
PKD1-235ENST00000568591 RAPGEF2Q9Y4G8 1499 aa27.57■■■□□ 2
PKD1-235ENST00000568591 ZNF316A6NFI3 1004 aaPredicted RBP27.57■■■□□ 2
PKD1-235ENST00000568591 BAZ1BQ9UIG0 1483 aaKnown RBP27.56■■■□□ 2
PKD1-235ENST00000568591 VPS8Q8N3P4 1428 aa27.49■■□□□ 1.99
PKD1-235ENST00000568591 CENPBP07199 599 aaPredicted RBP27.49■■□□□ 1.99
PKD1-235ENST00000568591 YTHDC1Q96MU7 727 aaKnown RBP27.41■■□□□ 1.98
PKD1-235ENST00000568591 APLP2Q06481 763 aa27.38■■□□□ 1.97
PKD1-235ENST00000568591 MIER1Q8N108 512 aa27.34■■□□□ 1.97
PKD1-235ENST00000568591 TOP2BQ02880 1626 aa27.31■■□□□ 1.96
PKD1-235ENST00000568591 KANK4Q5T7N3 995 aaPredicted RBP27.19■■□□□ 1.94
PKD1-235ENST00000568591 ARAP1Q96P48 1450 aa27.17■■□□□ 1.94
PKD1-235ENST00000568591 PRXQ9BXM0 1461 aa27.16■■□□□ 1.94
PKD1-235ENST00000568591 BIVM-ERCC5R4GMW8 1640 aa27.16■■□□□ 1.94
PKD1-235ENST00000568591 CUX1P39880 1505 aa27.09■■□□□ 1.93
PKD1-235ENST00000568591 MYT1Q01538 1121 aa27.08■■□□□ 1.93
PKD1-235ENST00000568591 ERICH3Q5RHP9 1530 aa27.07■■□□□ 1.92
PKD1-235ENST00000568591 DHX57Q6P158 1386 aaKnown RBP27.06■■□□□ 1.92
PKD1-235ENST00000568591 NCAPD3P42695 1498 aa26.96■■□□□ 1.91
PKD1-235ENST00000568591 KIF27Q86VH2 1401 aa26.95■■□□□ 1.91
PKD1-235ENST00000568591 HMGXB3Q12766 1538 aa26.91■■□□□ 1.9
PKD1-235ENST00000568591 ITGAEP38570 1179 aa26.91■■□□□ 1.9
PKD1-235ENST00000568591 ARHGAP35Q9NRY4 1499 aa26.89■■□□□ 1.9
PKD1-235ENST00000568591 RRBP1Q9P2E9 1410 aaKnown RBP26.87■■□□□ 1.89
PKD1-235ENST00000568591 CFTRP13569 1480 aa26.87■■□□□ 1.89
PKD1-235ENST00000568591 CLSPNQ9HAW4 1339 aa26.85■■□□□ 1.89
PKD1-235ENST00000568591 CCNB3Q8WWL7 1395 aa26.8■■□□□ 1.88
PKD1-235ENST00000568591 CUX2O14529 1486 aa26.74■■□□□ 1.87
PKD1-235ENST00000568591 IGF1RP08069 1367 aa26.73■■□□□ 1.87
PKD1-235ENST00000568591 RAB3GAP2Q9H2M9 1393 aa26.65■■□□□ 1.86
PKD1-235ENST00000568591 P3H3Q8IVL6 736 aa26.6■■□□□ 1.85
PKD1-235ENST00000568591 CARMIL1Q5VZK9 1371 aa26.6■■□□□ 1.85
PKD1-235ENST00000568591 TIAM1Q13009 1591 aa26.57■■□□□ 1.84
PKD1-235ENST00000568591 FGD5Q6ZNL6 1462 aa26.57■■□□□ 1.84
PKD1-235ENST00000568591 MAPKBP1O60336 1514 aa26.57■■□□□ 1.84
PKD1-235ENST00000568591 KCNH8Q96L42 1107 aa26.56■■□□□ 1.84
PKD1-235ENST00000568591 PHLDB1Q86UU1 1377 aa26.55■■□□□ 1.84
PKD1-235ENST00000568591 CADPSQ9ULU8 1353 aa26.53■■□□□ 1.84
PKD1-235ENST00000568591 ATP1B4Q9UN42 357 aaPredicted RBP26.51■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms