Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS4P0CW20 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS4P0CW20 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS4P0CW20 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS4P0CW20 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LIMS4P0CW20 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMS4P0CW20 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS4P0CW20 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LIMS4P0CW20 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LIMS4P0CW20 LINC01465-201ENST00000408887 1940 ntBASIC17.7■□□□□ 0.42
LIMS4P0CW20 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 AL356652.1-201ENST00000615962 565 ntBASIC17.7■□□□□ 0.42
LIMS4P0CW20 AC110285.6-201ENST00000617652 491 ntBASIC17.7■□□□□ 0.42
LIMS4P0CW20 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LIMS4P0CW20 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS4P0CW20 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 PTBP1P-201ENST00000554374 1601 ntBASIC17.69■□□□□ 0.42
LIMS4P0CW20 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 SUDS3P1-201ENST00000505831 966 ntBASIC17.69■□□□□ 0.42
LIMS4P0CW20 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMS4P0CW20 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS4P0CW20 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms