Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMS3P0CW19 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LIMS3P0CW19 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMS3P0CW19 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMS3P0CW19 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LIMS3P0CW19 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LIMS3P0CW19 LINC01465-201ENST00000408887 1940 ntBASIC17.7■□□□□ 0.42
LIMS3P0CW19 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 AL356652.1-201ENST00000615962 565 ntBASIC17.7■□□□□ 0.42
LIMS3P0CW19 AC110285.6-201ENST00000617652 491 ntBASIC17.7■□□□□ 0.42
LIMS3P0CW19 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LIMS3P0CW19 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMS3P0CW19 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 PTBP1P-201ENST00000554374 1601 ntBASIC17.69■□□□□ 0.42
LIMS3P0CW19 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 SUDS3P1-201ENST00000505831 966 ntBASIC17.69■□□□□ 0.42
LIMS3P0CW19 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMS3P0CW19 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms