Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
NKX2-3Q8TAU0 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31■■■□□ 2.55
NKX2-3Q8TAU0 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31■■■□□ 2.55
NKX2-3Q8TAU0 MIR3648-2-201ENST00000581792 180 ntBASIC31■■■□□ 2.55
NKX2-3Q8TAU0 MIR3648-1-201ENST00000615959 180 ntBASIC31■■■□□ 2.55
NKX2-3Q8TAU0 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
NKX2-3Q8TAU0 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
NKX2-3Q8TAU0 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
NKX2-3Q8TAU0 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.99■■■□□ 2.55
NKX2-3Q8TAU0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
NKX2-3Q8TAU0 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
NKX2-3Q8TAU0 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.99■■■□□ 2.55
NKX2-3Q8TAU0 AC021231.2-201ENST00000594613 730 ntBASIC30.99■■■□□ 2.55
NKX2-3Q8TAU0 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.99■■■□□ 2.55
NKX2-3Q8TAU0 AC016575.1-201ENST00000607026 382 ntBASIC30.98■■■□□ 2.55
NKX2-3Q8TAU0 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
NKX2-3Q8TAU0 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
NKX2-3Q8TAU0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.97■■■□□ 2.55
NKX2-3Q8TAU0 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.97■■■□□ 2.55
NKX2-3Q8TAU0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
NKX2-3Q8TAU0 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
NKX2-3Q8TAU0 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
NKX2-3Q8TAU0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.96■■■□□ 2.55
NKX2-3Q8TAU0 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
NKX2-3Q8TAU0 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.96■■■□□ 2.55
NKX2-3Q8TAU0 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
NKX2-3Q8TAU0 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.95■■■□□ 2.55
NKX2-3Q8TAU0 AC108673.1-201ENST00000510422 1159 ntBASIC30.95■■■□□ 2.55
NKX2-3Q8TAU0 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
NKX2-3Q8TAU0 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
NKX2-3Q8TAU0 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
NKX2-3Q8TAU0 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
NKX2-3Q8TAU0 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
NKX2-3Q8TAU0 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
NKX2-3Q8TAU0 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
NKX2-3Q8TAU0 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
NKX2-3Q8TAU0 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.91■■■□□ 2.54
NKX2-3Q8TAU0 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
NKX2-3Q8TAU0 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.9■■■□□ 2.54
NKX2-3Q8TAU0 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.9■■■□□ 2.54
NKX2-3Q8TAU0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
NKX2-3Q8TAU0 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.89■■■□□ 2.54
NKX2-3Q8TAU0 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NKX2-3Q8TAU0 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
NKX2-3Q8TAU0 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
NKX2-3Q8TAU0 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.86■■■□□ 2.53
NKX2-3Q8TAU0 AC127502.1-201ENST00000399971 1502 ntBASIC30.86■■■□□ 2.53
NKX2-3Q8TAU0 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
NKX2-3Q8TAU0 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.84■■■□□ 2.53
NKX2-3Q8TAU0 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
NKX2-3Q8TAU0 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.83■■■□□ 2.53
NKX2-3Q8TAU0 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC30.82■■■□□ 2.52
NKX2-3Q8TAU0 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
NKX2-3Q8TAU0 AC139426.1-201ENST00000568218 2529 ntBASIC30.82■■■□□ 2.52
NKX2-3Q8TAU0 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
NKX2-3Q8TAU0 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.81■■■□□ 2.52
NKX2-3Q8TAU0 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
NKX2-3Q8TAU0 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
NKX2-3Q8TAU0 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
NKX2-3Q8TAU0 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
NKX2-3Q8TAU0 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
NKX2-3Q8TAU0 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
NKX2-3Q8TAU0 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
NKX2-3Q8TAU0 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.78■■■□□ 2.52
NKX2-3Q8TAU0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
NKX2-3Q8TAU0 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.77■■■□□ 2.52
NKX2-3Q8TAU0 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC30.77■■■□□ 2.52
NKX2-3Q8TAU0 DUX4L11-201ENST00000611504 1267 ntBASIC30.77■■■□□ 2.52
NKX2-3Q8TAU0 DUX4L12-201ENST00000614593 1267 ntBASIC30.77■■■□□ 2.52
NKX2-3Q8TAU0 DUX4L14-201ENST00000621227 1267 ntBASIC30.77■■■□□ 2.52
NKX2-3Q8TAU0 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
NKX2-3Q8TAU0 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.76■■■□□ 2.51
NKX2-3Q8TAU0 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
NKX2-3Q8TAU0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
NKX2-3Q8TAU0 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
NKX2-3Q8TAU0 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.76■■■□□ 2.51
NKX2-3Q8TAU0 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NKX2-3Q8TAU0 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NKX2-3Q8TAU0 LINC01971-201ENST00000617888 1048 ntBASIC30.75■■■□□ 2.51
NKX2-3Q8TAU0 CR559946.2-201ENST00000623684 991 ntBASIC30.75■■■□□ 2.51
NKX2-3Q8TAU0 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.75■■■□□ 2.51
NKX2-3Q8TAU0 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NKX2-3Q8TAU0 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
NKX2-3Q8TAU0 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
NKX2-3Q8TAU0 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NKX2-3Q8TAU0 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NKX2-3Q8TAU0 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NKX2-3Q8TAU0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.73■■■□□ 2.51
NKX2-3Q8TAU0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
NKX2-3Q8TAU0 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
NKX2-3Q8TAU0 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
NKX2-3Q8TAU0 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.72■■■□□ 2.51
NKX2-3Q8TAU0 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NKX2-3Q8TAU0 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
NKX2-3Q8TAU0 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.71■■■□□ 2.51
NKX2-3Q8TAU0 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
NKX2-3Q8TAU0 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NKX2-3Q8TAU0 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
NKX2-3Q8TAU0 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NKX2-3Q8TAU0 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms