Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
USP48Q86UV5 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
USP48Q86UV5 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
USP48Q86UV5 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
USP48Q86UV5 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
USP48Q86UV5 AC120057.4-201ENST00000624722 1615 ntBASIC31.87■■■□□ 2.69
USP48Q86UV5 RARRES2P2-201ENST00000394842 485 ntBASIC31.87■■■□□ 2.69
USP48Q86UV5 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.87■■■□□ 2.69
USP48Q86UV5 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
USP48Q86UV5 ABCB10P1-201ENST00000614297 2181 ntBASIC31.86■■■□□ 2.69
USP48Q86UV5 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.86■■■□□ 2.69
USP48Q86UV5 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.86■■■□□ 2.69
USP48Q86UV5 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
USP48Q86UV5 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
USP48Q86UV5 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP48Q86UV5 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
USP48Q86UV5 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
USP48Q86UV5 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.84■■■□□ 2.69
USP48Q86UV5 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.83■■■□□ 2.69
USP48Q86UV5 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.83■■■□□ 2.69
USP48Q86UV5 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
USP48Q86UV5 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.82■■■□□ 2.68
USP48Q86UV5 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC31.82■■■□□ 2.68
USP48Q86UV5 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.82■■■□□ 2.68
USP48Q86UV5 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.81■■■□□ 2.68
USP48Q86UV5 ABHD17AP5-201ENST00000580133 923 ntBASIC31.8■■■□□ 2.68
USP48Q86UV5 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.8■■■□□ 2.68
USP48Q86UV5 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USP48Q86UV5 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
USP48Q86UV5 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.79■■■□□ 2.68
USP48Q86UV5 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
USP48Q86UV5 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
USP48Q86UV5 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
USP48Q86UV5 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
USP48Q86UV5 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP48Q86UV5 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP48Q86UV5 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP48Q86UV5 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP48Q86UV5 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP48Q86UV5 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.77■■■□□ 2.68
USP48Q86UV5 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
USP48Q86UV5 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
USP48Q86UV5 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
USP48Q86UV5 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP48Q86UV5 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP48Q86UV5 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
USP48Q86UV5 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
USP48Q86UV5 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP48Q86UV5 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
USP48Q86UV5 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
USP48Q86UV5 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
USP48Q86UV5 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
USP48Q86UV5 GPX1-201ENST00000419349 1106 ntBASIC31.72■■■□□ 2.67
USP48Q86UV5 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
USP48Q86UV5 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.72■■■□□ 2.67
USP48Q86UV5 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
USP48Q86UV5 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP48Q86UV5 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP48Q86UV5 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
USP48Q86UV5 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
USP48Q86UV5 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP48Q86UV5 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP48Q86UV5 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.69■■■□□ 2.66
USP48Q86UV5 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
USP48Q86UV5 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.68■■■□□ 2.66
USP48Q86UV5 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
USP48Q86UV5 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP48Q86UV5 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP48Q86UV5 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.67■■■□□ 2.66
USP48Q86UV5 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
USP48Q86UV5 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC31.67■■■□□ 2.66
USP48Q86UV5 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
USP48Q86UV5 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
USP48Q86UV5 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.64■■■□□ 2.66
USP48Q86UV5 RNF126P1-201ENST00000567452 1320 ntBASIC31.64■■■□□ 2.66
USP48Q86UV5 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC31.63■■■□□ 2.65
USP48Q86UV5 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
USP48Q86UV5 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.62■■■□□ 2.65
USP48Q86UV5 TPT1-202ENST00000379055 948 ntTSL 2 BASIC31.62■■■□□ 2.65
USP48Q86UV5 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP48Q86UV5 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.6■■■□□ 2.65
USP48Q86UV5 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
USP48Q86UV5 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.6■■■□□ 2.65
USP48Q86UV5 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP48Q86UV5 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
USP48Q86UV5 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC31.6■■■□□ 2.65
USP48Q86UV5 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
USP48Q86UV5 CHST11-202ENST00000546689 756 ntTSL 2 BASIC31.6■■■□□ 2.65
USP48Q86UV5 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP48Q86UV5 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
USP48Q86UV5 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.58■■■□□ 2.65
USP48Q86UV5 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
USP48Q86UV5 ABCB10P3-201ENST00000561950 2166 ntBASIC31.57■■■□□ 2.64
USP48Q86UV5 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP48Q86UV5 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
USP48Q86UV5 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.56■■■□□ 2.64
USP48Q86UV5 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.55■■■□□ 2.64
USP48Q86UV5 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC31.55■■■□□ 2.64
USP48Q86UV5 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
USP48Q86UV5 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC31.54■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms