Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
RNF43Q68DV7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
RNF43Q68DV7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
RNF43Q68DV7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC27.14■■□□□ 1.94
RNF43Q68DV7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.14■■□□□ 1.94
RNF43Q68DV7 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
RNF43Q68DV7 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
RNF43Q68DV7 MIR4449-201ENST00000578365 66 ntBASIC27.13■■□□□ 1.93
RNF43Q68DV7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RNF43Q68DV7 AC139426.1-201ENST00000568218 2529 ntBASIC27.13■■□□□ 1.93
RNF43Q68DV7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
RNF43Q68DV7 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
RNF43Q68DV7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF43Q68DV7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
RNF43Q68DV7 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC27.12■■□□□ 1.93
RNF43Q68DV7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
RNF43Q68DV7 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC27.12■■□□□ 1.93
RNF43Q68DV7 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC27.11■■□□□ 1.93
RNF43Q68DV7 AC021231.2-201ENST00000594613 730 ntBASIC27.11■■□□□ 1.93
RNF43Q68DV7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
RNF43Q68DV7 DUX4L29-201ENST00000425409 679 ntBASIC27.1■■□□□ 1.93
RNF43Q68DV7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC27.09■■□□□ 1.93
RNF43Q68DV7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC27.09■■□□□ 1.93
RNF43Q68DV7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
RNF43Q68DV7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
RNF43Q68DV7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
RNF43Q68DV7 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
RNF43Q68DV7 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC27.06■■□□□ 1.92
RNF43Q68DV7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC27.05■■□□□ 1.92
RNF43Q68DV7 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC27.04■■□□□ 1.92
RNF43Q68DV7 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
RNF43Q68DV7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
RNF43Q68DV7 MIR639-201ENST00000384974 98 ntBASIC27.03■■□□□ 1.92
RNF43Q68DV7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.02■■□□□ 1.92
RNF43Q68DV7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC27.02■■□□□ 1.92
RNF43Q68DV7 AC010864.1-201ENST00000609407 1511 ntBASIC27.02■■□□□ 1.92
RNF43Q68DV7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC27.02■■□□□ 1.92
RNF43Q68DV7 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
RNF43Q68DV7 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
RNF43Q68DV7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
RNF43Q68DV7 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
RNF43Q68DV7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
RNF43Q68DV7 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
RNF43Q68DV7 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
RNF43Q68DV7 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.97■■□□□ 1.91
RNF43Q68DV7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RNF43Q68DV7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.97■■□□□ 1.91
RNF43Q68DV7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.96■■□□□ 1.91
RNF43Q68DV7 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
RNF43Q68DV7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
RNF43Q68DV7 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
RNF43Q68DV7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.94■■□□□ 1.9
RNF43Q68DV7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
RNF43Q68DV7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.93■■□□□ 1.9
RNF43Q68DV7 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC26.93■■□□□ 1.9
RNF43Q68DV7 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
RNF43Q68DV7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
RNF43Q68DV7 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
RNF43Q68DV7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
RNF43Q68DV7 AL135925.1-201ENST00000605920 1701 ntBASIC26.91■■□□□ 1.9
RNF43Q68DV7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
RNF43Q68DV7 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
RNF43Q68DV7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RNF43Q68DV7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.91■■□□□ 1.9
RNF43Q68DV7 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.9■■□□□ 1.9
RNF43Q68DV7 HSD17B1P1-201ENST00000590052 955 ntBASIC26.9■■□□□ 1.9
RNF43Q68DV7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
RNF43Q68DV7 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.89■■□□□ 1.9
RNF43Q68DV7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
RNF43Q68DV7 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
RNF43Q68DV7 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.88■■□□□ 1.89
RNF43Q68DV7 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
RNF43Q68DV7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
RNF43Q68DV7 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RNF43Q68DV7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
RNF43Q68DV7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RNF43Q68DV7 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
RNF43Q68DV7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
RNF43Q68DV7 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.86■■□□□ 1.89
RNF43Q68DV7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
RNF43Q68DV7 LINC01971-201ENST00000617888 1048 ntBASIC26.86■■□□□ 1.89
RNF43Q68DV7 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RNF43Q68DV7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RNF43Q68DV7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.85■■□□□ 1.89
RNF43Q68DV7 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
RNF43Q68DV7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
RNF43Q68DV7 AC016575.1-201ENST00000607026 382 ntBASIC26.84■■□□□ 1.89
RNF43Q68DV7 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
RNF43Q68DV7 MIR3648-2-201ENST00000581792 180 ntBASIC26.83■■□□□ 1.89
RNF43Q68DV7 MIR3648-1-201ENST00000615959 180 ntBASIC26.83■■□□□ 1.89
RNF43Q68DV7 BRD4-212ENST00000630599 726 ntTSL 2 BASIC26.83■■□□□ 1.89
RNF43Q68DV7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
RNF43Q68DV7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.82■■□□□ 1.88
RNF43Q68DV7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.82■■□□□ 1.88
RNF43Q68DV7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.82■■□□□ 1.88
RNF43Q68DV7 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.82■■□□□ 1.88
RNF43Q68DV7 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
RNF43Q68DV7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.81■■□□□ 1.88
RNF43Q68DV7 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
RNF43Q68DV7 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms