Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DMBP28068 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DMBP28068 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DMBP28068 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
HLA-DMBP28068 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HLA-DMBP28068 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DMBP28068 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HLA-DMBP28068 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DMBP28068 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DMBP28068 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DMBP28068 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
HLA-DMBP28068 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.62■□□□□ 0.73
HLA-DMBP28068 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.62■□□□□ 0.73
HLA-DMBP28068 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.61■□□□□ 0.73
HLA-DMBP28068 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC19.61■□□□□ 0.73
HLA-DMBP28068 DENR-202ENST00000455982 1052 ntTSL 5 BASIC19.61■□□□□ 0.73
HLA-DMBP28068 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DMBP28068 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DMBP28068 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.59■□□□□ 0.73
HLA-DMBP28068 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HLA-DMBP28068 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
HLA-DMBP28068 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.59■□□□□ 0.73
HLA-DMBP28068 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HLA-DMBP28068 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HLA-DMBP28068 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HLA-DMBP28068 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC19.58■□□□□ 0.72
HLA-DMBP28068 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
HLA-DMBP28068 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HLA-DMBP28068 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.57■□□□□ 0.72
HLA-DMBP28068 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
HLA-DMBP28068 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
HLA-DMBP28068 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC19.57■□□□□ 0.72
HLA-DMBP28068 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HLA-DMBP28068 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DMBP28068 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DMBP28068 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.55■□□□□ 0.72
HLA-DMBP28068 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.55■□□□□ 0.72
HLA-DMBP28068 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DMBP28068 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DMBP28068 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DMBP28068 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
HLA-DMBP28068 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DMBP28068 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DMBP28068 AC127502.1-201ENST00000399971 1502 ntBASIC19.53■□□□□ 0.72
HLA-DMBP28068 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DMBP28068 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DMBP28068 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HLA-DMBP28068 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DMBP28068 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DMBP28068 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
HLA-DMBP28068 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DMBP28068 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DMBP28068 RPS2P35-201ENST00000443417 897 ntBASIC19.5■□□□□ 0.71
HLA-DMBP28068 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DMBP28068 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.5■□□□□ 0.71
HLA-DMBP28068 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DMBP28068 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DMBP28068 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DMBP28068 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
HLA-DMBP28068 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HLA-DMBP28068 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DMBP28068 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DMBP28068 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DMBP28068 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HLA-DMBP28068 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.47■□□□□ 0.71
HLA-DMBP28068 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC19.47■□□□□ 0.71
HLA-DMBP28068 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DMBP28068 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HLA-DMBP28068 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.47■□□□□ 0.71
HLA-DMBP28068 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DMBP28068 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC19.46■□□□□ 0.71
HLA-DMBP28068 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DMBP28068 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DMBP28068 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
HLA-DMBP28068 AP006261.1-201ENST00000584783 668 ntBASIC19.45■□□□□ 0.7
HLA-DMBP28068 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HLA-DMBP28068 HNRNPLP2-201ENST00000568980 1570 ntBASIC19.44■□□□□ 0.7
HLA-DMBP28068 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-DMBP28068 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HLA-DMBP28068 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-DMBP28068 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.44■□□□□ 0.7
HLA-DMBP28068 MIR762-201ENST00000390236 83 ntBASIC19.44■□□□□ 0.7
HLA-DMBP28068 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC19.44■□□□□ 0.7
HLA-DMBP28068 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-DMBP28068 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms