Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CLPTM1O96005 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CLPTM1O96005 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC24.25■■□□□ 1.47
CLPTM1O96005 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC24.25■■□□□ 1.47
CLPTM1O96005 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CLPTM1O96005 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CLPTM1O96005 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CLPTM1O96005 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CLPTM1O96005 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CLPTM1O96005 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CLPTM1O96005 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.23■■□□□ 1.47
CLPTM1O96005 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.23■■□□□ 1.47
CLPTM1O96005 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.23■■□□□ 1.47
CLPTM1O96005 AL449106.1-201ENST00000608517 1980 ntBASIC24.23■■□□□ 1.47
CLPTM1O96005 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
CLPTM1O96005 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
CLPTM1O96005 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
CLPTM1O96005 AL135925.1-201ENST00000605920 1701 ntBASIC24.22■■□□□ 1.47
CLPTM1O96005 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC24.22■■□□□ 1.47
CLPTM1O96005 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CLPTM1O96005 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CLPTM1O96005 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CLPTM1O96005 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CLPTM1O96005 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CLPTM1O96005 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CLPTM1O96005 AL139393.2-201ENST00000608721 2025 ntBASIC24.2■■□□□ 1.47
CLPTM1O96005 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
CLPTM1O96005 MVK-208ENST00000539696 608 ntTSL 5 BASIC24.2■■□□□ 1.46
CLPTM1O96005 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.2■■□□□ 1.46
CLPTM1O96005 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.2■■□□□ 1.46
CLPTM1O96005 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
CLPTM1O96005 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
CLPTM1O96005 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CLPTM1O96005 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CLPTM1O96005 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CLPTM1O96005 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.17■■□□□ 1.46
CLPTM1O96005 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.17■■□□□ 1.46
CLPTM1O96005 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
CLPTM1O96005 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CLPTM1O96005 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC24.16■■□□□ 1.46
CLPTM1O96005 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24.16■■□□□ 1.46
CLPTM1O96005 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CLPTM1O96005 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CLPTM1O96005 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CLPTM1O96005 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CLPTM1O96005 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CLPTM1O96005 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CLPTM1O96005 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CLPTM1O96005 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CLPTM1O96005 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CLPTM1O96005 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CLPTM1O96005 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CLPTM1O96005 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CLPTM1O96005 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.12■■□□□ 1.45
CLPTM1O96005 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.12■■□□□ 1.45
CLPTM1O96005 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.11■■□□□ 1.45
CLPTM1O96005 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
CLPTM1O96005 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.11■■□□□ 1.45
CLPTM1O96005 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
CLPTM1O96005 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CLPTM1O96005 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.1■■□□□ 1.45
CLPTM1O96005 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
CLPTM1O96005 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.09■■□□□ 1.45
CLPTM1O96005 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
CLPTM1O96005 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
CLPTM1O96005 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CLPTM1O96005 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CLPTM1O96005 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
CLPTM1O96005 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
CLPTM1O96005 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CLPTM1O96005 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
CLPTM1O96005 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CLPTM1O96005 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC24.06■■□□□ 1.44
CLPTM1O96005 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
CLPTM1O96005 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CLPTM1O96005 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
CLPTM1O96005 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
CLPTM1O96005 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CLPTM1O96005 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CLPTM1O96005 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CLPTM1O96005 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
CLPTM1O96005 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CLPTM1O96005 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CLPTM1O96005 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CLPTM1O96005 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.01■■□□□ 1.43
CLPTM1O96005 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CLPTM1O96005 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.01■■□□□ 1.43
CLPTM1O96005 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CLPTM1O96005 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CLPTM1O96005 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.01■■□□□ 1.43
CLPTM1O96005 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.01■■□□□ 1.43
CLPTM1O96005 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.01■■□□□ 1.43
CLPTM1O96005 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24■■□□□ 1.43
CLPTM1O96005 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24■■□□□ 1.43
CLPTM1O96005 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
CLPTM1O96005 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CLPTM1O96005 BX255925.1-201ENST00000566954 1854 ntBASIC23.99■■□□□ 1.43
CLPTM1O96005 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.99■■□□□ 1.43
CLPTM1O96005 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.99■■□□□ 1.43
CLPTM1O96005 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms