Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRAV17A0A0B4J275 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
TRAV17A0A0B4J275 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRAV17A0A0B4J275 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRAV17A0A0B4J275 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.81■■□□□ 1.4
TRAV17A0A0B4J275 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.8■■□□□ 1.4
TRAV17A0A0B4J275 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRAV17A0A0B4J275 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRAV17A0A0B4J275 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.79■■□□□ 1.4
TRAV17A0A0B4J275 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.79■■□□□ 1.4
TRAV17A0A0B4J275 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRAV17A0A0B4J275 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.79■■□□□ 1.4
TRAV17A0A0B4J275 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRAV17A0A0B4J275 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRAV17A0A0B4J275 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TRAV17A0A0B4J275 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
TRAV17A0A0B4J275 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.77■■□□□ 1.4
TRAV17A0A0B4J275 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.77■■□□□ 1.4
TRAV17A0A0B4J275 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TRAV17A0A0B4J275 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRAV17A0A0B4J275 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.75■■□□□ 1.39
TRAV17A0A0B4J275 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRAV17A0A0B4J275 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TRAV17A0A0B4J275 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRAV17A0A0B4J275 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
TRAV17A0A0B4J275 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.71■■□□□ 1.39
TRAV17A0A0B4J275 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
TRAV17A0A0B4J275 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRAV17A0A0B4J275 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRAV17A0A0B4J275 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
TRAV17A0A0B4J275 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
TRAV17A0A0B4J275 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.69■■□□□ 1.38
TRAV17A0A0B4J275 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.69■■□□□ 1.38
TRAV17A0A0B4J275 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.69■■□□□ 1.38
TRAV17A0A0B4J275 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRAV17A0A0B4J275 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.68■■□□□ 1.38
TRAV17A0A0B4J275 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
TRAV17A0A0B4J275 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.68■■□□□ 1.38
TRAV17A0A0B4J275 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
TRAV17A0A0B4J275 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
TRAV17A0A0B4J275 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRAV17A0A0B4J275 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC23.66■■□□□ 1.38
TRAV17A0A0B4J275 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRAV17A0A0B4J275 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRAV17A0A0B4J275 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TRAV17A0A0B4J275 AC127502.1-201ENST00000399971 1502 ntBASIC23.65■■□□□ 1.38
TRAV17A0A0B4J275 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRAV17A0A0B4J275 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.65■■□□□ 1.38
TRAV17A0A0B4J275 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TRAV17A0A0B4J275 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
TRAV17A0A0B4J275 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
TRAV17A0A0B4J275 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
TRAV17A0A0B4J275 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.64■■□□□ 1.37
TRAV17A0A0B4J275 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.64■■□□□ 1.37
TRAV17A0A0B4J275 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
TRAV17A0A0B4J275 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.62■■□□□ 1.37
TRAV17A0A0B4J275 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
TRAV17A0A0B4J275 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.61■■□□□ 1.37
TRAV17A0A0B4J275 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
TRAV17A0A0B4J275 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
TRAV17A0A0B4J275 AL135925.1-201ENST00000605920 1701 ntBASIC23.59■■□□□ 1.37
TRAV17A0A0B4J275 AC008813.1-201ENST00000536597 885 ntBASIC23.59■■□□□ 1.37
TRAV17A0A0B4J275 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TRAV17A0A0B4J275 AC135983.2-203ENST00000454486 1613 ntBASIC23.59■■□□□ 1.37
TRAV17A0A0B4J275 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
TRAV17A0A0B4J275 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
TRAV17A0A0B4J275 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
TRAV17A0A0B4J275 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRAV17A0A0B4J275 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.57■■□□□ 1.36
TRAV17A0A0B4J275 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRAV17A0A0B4J275 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.56■■□□□ 1.36
TRAV17A0A0B4J275 GPX1-201ENST00000419349 1106 ntBASIC23.56■■□□□ 1.36
TRAV17A0A0B4J275 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
TRAV17A0A0B4J275 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
TRAV17A0A0B4J275 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRAV17A0A0B4J275 RARRES2P2-201ENST00000394842 485 ntBASIC23.55■■□□□ 1.36
TRAV17A0A0B4J275 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
TRAV17A0A0B4J275 WHAMMP2-203ENST00000563942 1603 ntBASIC23.55■■□□□ 1.36
TRAV17A0A0B4J275 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.54■■□□□ 1.36
TRAV17A0A0B4J275 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
TRAV17A0A0B4J275 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
TRAV17A0A0B4J275 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
TRAV17A0A0B4J275 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
TRAV17A0A0B4J275 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.53■■□□□ 1.36
TRAV17A0A0B4J275 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
TRAV17A0A0B4J275 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.53■■□□□ 1.36
TRAV17A0A0B4J275 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
TRAV17A0A0B4J275 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
TRAV17A0A0B4J275 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
TRAV17A0A0B4J275 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC23.52■■□□□ 1.36
TRAV17A0A0B4J275 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms