Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
UPF3AQ9H1J1 KRT18P22-201ENST00000402024 1347 ntBASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 AL049796.1-201ENST00000565336 1766 ntBASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 TERF1P1-201ENST00000311003 1181 ntBASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
UPF3AQ9H1J1 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 KRT18P57-201ENST00000443599 1254 ntBASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
UPF3AQ9H1J1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 TPM1-226ENST00000560959 925 ntTSL 2 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 NME3-204ENST00000563498 920 ntTSL 2 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.29■■□□□ 1.16
UPF3AQ9H1J1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 SLC25A3P1-201ENST00000443844 931 ntBASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 RBM42-202ENST00000586618 771 ntTSL 3 BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UPF3AQ9H1J1 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 C1QL1P1-201ENST00000568105 661 ntBASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC22.27■■□□□ 1.16
UPF3AQ9H1J1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 KRT8P17-201ENST00000453110 1448 ntBASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 MESTP1-201ENST00000404287 994 ntBASIC22.26■■□□□ 1.15
UPF3AQ9H1J1 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms