Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 AC007225.1-201ENST00000566331 1836 ntBASIC19.17■□□□□ 0.66
RNF220Q5VTB9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 AC008175.2-201ENST00000612840 297 ntBASIC19.17■□□□□ 0.66
RNF220Q5VTB9 AC061975.6-201ENST00000579045 1553 ntBASIC19.17■□□□□ 0.66
RNF220Q5VTB9 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 NOC2LP1-202ENST00000452600 2235 ntBASIC19.17■□□□□ 0.66
RNF220Q5VTB9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RNF220Q5VTB9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 AC123595.1-201ENST00000440769 1046 ntBASIC19.16■□□□□ 0.66
RNF220Q5VTB9 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 AC138907.5-202ENST00000569484 235 ntBASIC19.16■□□□□ 0.66
RNF220Q5VTB9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RNF220Q5VTB9 AC018470.1-201ENST00000624790 3129 ntBASIC19.16■□□□□ 0.66
RNF220Q5VTB9 AC106820.2-201ENST00000563775 3264 ntBASIC19.15■□□□□ 0.66
RNF220Q5VTB9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF220Q5VTB9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RNF220Q5VTB9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
RNF220Q5VTB9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RNF220Q5VTB9 AC121338.2-201ENST00000622535 1744 ntBASIC19.14■□□□□ 0.66
RNF220Q5VTB9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 AP000997.3-201ENST00000623333 2250 ntBASIC19.14■□□□□ 0.65
RNF220Q5VTB9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF220Q5VTB9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 YBX1P1-201ENST00000445822 960 ntBASIC19.13■□□□□ 0.65
RNF220Q5VTB9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RNF220Q5VTB9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms