Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
MSX2P35548 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX2P35548 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.03■□□□□ 0.64
MSX2P35548 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
MSX2P35548 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSX2P35548 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSX2P35548 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.03■□□□□ 0.64
MSX2P35548 AL136116.3-201ENST00000402907 1138 ntBASIC19.03■□□□□ 0.64
MSX2P35548 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.03■□□□□ 0.64
MSX2P35548 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 AL136162.1-201ENST00000607711 1078 ntBASIC19.03■□□□□ 0.64
MSX2P35548 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.03■□□□□ 0.64
MSX2P35548 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSX2P35548 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSX2P35548 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSX2P35548 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.03■□□□□ 0.64
MSX2P35548 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.02■□□□□ 0.64
MSX2P35548 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.02■□□□□ 0.64
MSX2P35548 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.02■□□□□ 0.64
MSX2P35548 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.02■□□□□ 0.64
MSX2P35548 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 KRT8P36-201ENST00000489121 1440 ntBASIC19.02■□□□□ 0.64
MSX2P35548 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MSX2P35548 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
MSX2P35548 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.02■□□□□ 0.63
MSX2P35548 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.02■□□□□ 0.63
MSX2P35548 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
MSX2P35548 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.01■□□□□ 0.63
MSX2P35548 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.01■□□□□ 0.63
MSX2P35548 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.01■□□□□ 0.63
MSX2P35548 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.01■□□□□ 0.63
MSX2P35548 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
MSX2P35548 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.01■□□□□ 0.63
MSX2P35548 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
MSX2P35548 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSX2P35548 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 AL032819.2-201ENST00000624543 2162 ntBASIC19■□□□□ 0.63
MSX2P35548 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19■□□□□ 0.63
MSX2P35548 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19■□□□□ 0.63
MSX2P35548 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19■□□□□ 0.63
MSX2P35548 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 AC005332.8-201ENST00000622750 2735 ntBASIC19■□□□□ 0.63
MSX2P35548 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19■□□□□ 0.63
MSX2P35548 MPST-208ENST00000628507 698 ntTSL 5 BASIC19■□□□□ 0.63
MSX2P35548 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19■□□□□ 0.63
MSX2P35548 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
MSX2P35548 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19■□□□□ 0.63
MSX2P35548 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
MSX2P35548 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
MSX2P35548 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.99■□□□□ 0.63
MSX2P35548 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.99■□□□□ 0.63
MSX2P35548 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSX2P35548 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms