Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP48Q86UV5 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC24.55■■□□□ 1.52
USP48Q86UV5 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USP48Q86UV5 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC24.55■■□□□ 1.52
USP48Q86UV5 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC24.54■■□□□ 1.52
USP48Q86UV5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC24.54■■□□□ 1.52
USP48Q86UV5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
USP48Q86UV5 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC24.54■■□□□ 1.52
USP48Q86UV5 RARRES2P10-201ENST00000564312 460 ntBASIC24.54■■□□□ 1.52
USP48Q86UV5 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC24.54■■□□□ 1.52
USP48Q86UV5 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC24.54■■□□□ 1.52
USP48Q86UV5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC24.54■■□□□ 1.52
USP48Q86UV5 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP48Q86UV5 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC24.53■■□□□ 1.52
USP48Q86UV5 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP48Q86UV5 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP48Q86UV5 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP48Q86UV5 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
USP48Q86UV5 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC24.53■■□□□ 1.52
USP48Q86UV5 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USP48Q86UV5 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USP48Q86UV5 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC24.53■■□□□ 1.52
USP48Q86UV5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC24.53■■□□□ 1.52
USP48Q86UV5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USP48Q86UV5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC24.52■■□□□ 1.52
USP48Q86UV5 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
USP48Q86UV5 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC24.52■■□□□ 1.52
USP48Q86UV5 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC24.52■■□□□ 1.52
USP48Q86UV5 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC24.52■■□□□ 1.52
USP48Q86UV5 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC24.52■■□□□ 1.52
USP48Q86UV5 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC24.52■■□□□ 1.52
USP48Q86UV5 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC24.52■■□□□ 1.52
USP48Q86UV5 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC24.52■■□□□ 1.52
USP48Q86UV5 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC24.52■■□□□ 1.52
USP48Q86UV5 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP48Q86UV5 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC24.51■■□□□ 1.51
USP48Q86UV5 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
USP48Q86UV5 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC24.51■■□□□ 1.51
USP48Q86UV5 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
USP48Q86UV5 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC24.51■■□□□ 1.51
USP48Q86UV5 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP48Q86UV5 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP48Q86UV5 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP48Q86UV5 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP48Q86UV5 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC24.5■■□□□ 1.51
USP48Q86UV5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP48Q86UV5 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP48Q86UV5 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP48Q86UV5 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP48Q86UV5 CABP2-204ENST00000636477 941 ntTSL 5 BASIC24.5■■□□□ 1.51
USP48Q86UV5 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
USP48Q86UV5 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP48Q86UV5 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
USP48Q86UV5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
USP48Q86UV5 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP48Q86UV5 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC24.49■■□□□ 1.51
USP48Q86UV5 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
USP48Q86UV5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24.49■■□□□ 1.51
USP48Q86UV5 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP48Q86UV5 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP48Q86UV5 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP48Q86UV5 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP48Q86UV5 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP48Q86UV5 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC24.49■■□□□ 1.51
USP48Q86UV5 SERP1-205ENST00000487153 657 ntTSL 4 BASIC24.49■■□□□ 1.51
USP48Q86UV5 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC24.49■■□□□ 1.51
USP48Q86UV5 AC005829.2-201ENST00000571422 1056 ntBASIC24.49■■□□□ 1.51
USP48Q86UV5 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC24.49■■□□□ 1.51
USP48Q86UV5 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP48Q86UV5 AC026471.5-201ENST00000615068 467 ntBASIC24.49■■□□□ 1.51
USP48Q86UV5 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms