Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC23.23■■□□□ 1.31
HMGCS2P54868 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGCS2P54868 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HMGCS2P54868 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGCS2P54868 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGCS2P54868 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGCS2P54868 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC23.22■■□□□ 1.31
HMGCS2P54868 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.22■■□□□ 1.31
HMGCS2P54868 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 PLK5-205ENST00000642079 1969 ntBASIC23.22■■□□□ 1.31
HMGCS2P54868 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
HMGCS2P54868 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC23.22■■□□□ 1.31
HMGCS2P54868 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC23.22■■□□□ 1.31
HMGCS2P54868 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.22■■□□□ 1.31
HMGCS2P54868 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC23.22■■□□□ 1.31
HMGCS2P54868 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGCS2P54868 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGCS2P54868 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.21■■□□□ 1.31
HMGCS2P54868 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HMGCS2P54868 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
HMGCS2P54868 NIFKP9-201ENST00000419265 221 ntBASIC23.21■■□□□ 1.31
HMGCS2P54868 AL390955.1-201ENST00000428694 934 ntBASIC23.21■■□□□ 1.31
HMGCS2P54868 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC23.21■■□□□ 1.31
HMGCS2P54868 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC23.21■■□□□ 1.31
HMGCS2P54868 GLDC-219ENST00000640208 420 ntTSL 2 BASIC23.21■■□□□ 1.31
HMGCS2P54868 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HMGCS2P54868 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGCS2P54868 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.21■■□□□ 1.31
HMGCS2P54868 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGCS2P54868 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC23.21■■□□□ 1.31
HMGCS2P54868 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HMGCS2P54868 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.31
HMGCS2P54868 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGCS2P54868 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGCS2P54868 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.2■■□□□ 1.3
HMGCS2P54868 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
HMGCS2P54868 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
HMGCS2P54868 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC23.2■■□□□ 1.3
HMGCS2P54868 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC23.2■■□□□ 1.3
HMGCS2P54868 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGCS2P54868 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC23.2■■□□□ 1.3
HMGCS2P54868 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
HMGCS2P54868 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC23.2■■□□□ 1.3
HMGCS2P54868 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGCS2P54868 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC23.2■■□□□ 1.3
HMGCS2P54868 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC23.2■■□□□ 1.3
HMGCS2P54868 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
HMGCS2P54868 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
HMGCS2P54868 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.2■■□□□ 1.3
HMGCS2P54868 FEM1AP4-201ENST00000443167 1987 ntBASIC23.2■■□□□ 1.3
HMGCS2P54868 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.19■■□□□ 1.3
HMGCS2P54868 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 AC133561.1-201ENST00000568600 2415 ntBASIC23.19■■□□□ 1.3
HMGCS2P54868 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC23.19■■□□□ 1.3
HMGCS2P54868 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC23.19■■□□□ 1.3
HMGCS2P54868 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC23.19■■□□□ 1.3
HMGCS2P54868 KSR1P1-201ENST00000446298 240 ntBASIC23.19■■□□□ 1.3
HMGCS2P54868 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC23.19■■□□□ 1.3
HMGCS2P54868 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
HMGCS2P54868 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HMGCS2P54868 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC23.19■■□□□ 1.3
HMGCS2P54868 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC23.19■■□□□ 1.3
HMGCS2P54868 AC005363.2-201ENST00000618631 242 ntBASIC23.19■■□□□ 1.3
HMGCS2P54868 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
HMGCS2P54868 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.19■■□□□ 1.3
HMGCS2P54868 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGCS2P54868 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGCS2P54868 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGCS2P54868 KRT8P17-201ENST00000453110 1448 ntBASIC23.18■■□□□ 1.3
HMGCS2P54868 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.18■■□□□ 1.3
HMGCS2P54868 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGCS2P54868 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGCS2P54868 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGCS2P54868 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGCS2P54868 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGCS2P54868 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC23.18■■□□□ 1.3
HMGCS2P54868 AC116562.2-201ENST00000507042 360 ntBASIC23.18■■□□□ 1.3
HMGCS2P54868 KRT18P35-201ENST00000510488 1269 ntBASIC23.18■■□□□ 1.3
HMGCS2P54868 P4HB-223ENST00000576390 439 ntTSL 4 BASIC23.18■■□□□ 1.3
HMGCS2P54868 AC092865.7-201ENST00000641832 219 ntBASIC23.18■■□□□ 1.3
HMGCS2P54868 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGCS2P54868 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.18■■□□□ 1.3
HMGCS2P54868 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGCS2P54868 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms