Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.47■□□□□ 0.71
PCNAP12004 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.47■□□□□ 0.71
PCNAP12004 AC073111.5-205ENST00000641717 521 ntBASIC19.47■□□□□ 0.71
PCNAP12004 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.47■□□□□ 0.71
PCNAP12004 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
PCNAP12004 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.47■□□□□ 0.71
PCNAP12004 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PCNAP12004 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.47■□□□□ 0.71
PCNAP12004 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCNAP12004 AL162377.1-201ENST00000618844 1793 ntBASIC19.47■□□□□ 0.71
PCNAP12004 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCNAP12004 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PCNAP12004 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PCNAP12004 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.46■□□□□ 0.71
PCNAP12004 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
PCNAP12004 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
PCNAP12004 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.46■□□□□ 0.71
PCNAP12004 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.46■□□□□ 0.71
PCNAP12004 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCNAP12004 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.46■□□□□ 0.71
PCNAP12004 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.46■□□□□ 0.71
PCNAP12004 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.46■□□□□ 0.71
PCNAP12004 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.46■□□□□ 0.71
PCNAP12004 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCNAP12004 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCNAP12004 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.46■□□□□ 0.71
PCNAP12004 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCNAP12004 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.46■□□□□ 0.71
PCNAP12004 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCNAP12004 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
PCNAP12004 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.46■□□□□ 0.71
PCNAP12004 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.46■□□□□ 0.71
PCNAP12004 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
PCNAP12004 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
PCNAP12004 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
PCNAP12004 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.45■□□□□ 0.7
PCNAP12004 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PCNAP12004 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.45■□□□□ 0.7
PCNAP12004 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.45■□□□□ 0.7
PCNAP12004 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.45■□□□□ 0.7
PCNAP12004 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
PCNAP12004 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.45■□□□□ 0.7
PCNAP12004 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.45■□□□□ 0.7
PCNAP12004 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.45■□□□□ 0.7
PCNAP12004 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 AC099778.1-201ENST00000568593 1911 ntBASIC19.45■□□□□ 0.7
PCNAP12004 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCNAP12004 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.45■□□□□ 0.7
PCNAP12004 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PCNAP12004 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
PCNAP12004 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.44■□□□□ 0.7
PCNAP12004 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.44■□□□□ 0.7
PCNAP12004 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
PCNAP12004 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 AL355472.2-201ENST00000422958 438 ntBASIC19.44■□□□□ 0.7
PCNAP12004 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
PCNAP12004 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.44■□□□□ 0.7
PCNAP12004 AC100791.3-201ENST00000617619 330 ntBASIC19.44■□□□□ 0.7
PCNAP12004 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PCNAP12004 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.44■□□□□ 0.7
PCNAP12004 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PCNAP12004 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.44■□□□□ 0.7
PCNAP12004 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.44■□□□□ 0.7
PCNAP12004 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PCNAP12004 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCNAP12004 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCNAP12004 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCNAP12004 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCNAP12004 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.43■□□□□ 0.7
PCNAP12004 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCNAP12004 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCNAP12004 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCNAP12004 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCNAP12004 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms