Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 AC079089.2-201ENST00000531211 1277 ntBASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMCO4Q9NRQ5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMCO4Q9NRQ5 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 TMEM179-206ENST00000616017 1645 ntBASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMCO4Q9NRQ5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SMCO4Q9NRQ5 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SMCO4Q9NRQ5 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMCO4Q9NRQ5 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
SMCO4Q9NRQ5 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMCO4Q9NRQ5 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
SMCO4Q9NRQ5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC15.77■□□□□ 0.11
SMCO4Q9NRQ5 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMCO4Q9NRQ5 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SMCO4Q9NRQ5 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms