Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ADGRE5-202ENST00000357355 3054 ntTSL 1 (best) BASIC13.96□□□□□ -0.181e-6■■■■□ 24.1
UPF1Q92900 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.181e-6■■■■□ 24.1
UPF1Q92900 PEA15-204ENST00000488858 654 ntTSL 213.47□□□□□ -0.251e-6■■■■□ 24.1
UPF1Q92900 NDUFA10-210ENST00000471378 582 ntTSL 313.33□□□□□ -0.281e-6■■■■□ 24.1
UPF1Q92900 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.281e-6■■■■□ 24.1
UPF1Q92900 EIF5-205ENST00000558506 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.34e-7■■■■□ 24.1
UPF1Q92900 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.322e-7■■■■□ 24.1
UPF1Q92900 SHMT1-205ENST00000395684 2652 ntTSL 1 (best)12.95□□□□□ -0.342e-6■■■■□ 24.1
UPF1Q92900 ADGRE5-201ENST00000242786 3188 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.421e-6■■■■□ 24.1
UPF1Q92900 FAM199X-201ENST00000299906 2237 ntTSL 1 (best)11.84□□□□□ -0.512e-12■■■■□ 24.1
UPF1Q92900 C11orf49-202ENST00000378615 1651 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.541e-6■■■■□ 24.1
UPF1Q92900 F2R-201ENST00000319211 3821 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.551e-6■■■■□ 24.1
UPF1Q92900 NDUFA10-212ENST00000485344 4509 ntTSL 211.59□□□□□ -0.551e-6■■■■□ 24.1
UPF1Q92900 EIF5-220ENST00000561406 384 ntTSL 311.53□□□□□ -0.568e-8■■■■□ 24.1
UPF1Q92900 NIP7-202ENST00000254941 1887 ntTSL 1 (best) BASIC11.39□□□□□ -0.592e-6■■■■□ 24.1
UPF1Q92900 TADA2B-205ENST00000515646 3818 ntBASIC11.37□□□□□ -0.591e-6■■■■□ 24.1
UPF1Q92900 ATP2A2-202ENST00000313432 5575 ntTSL 1 (best)9.44□□□□□ -0.91e-6■■■■□ 24.1
UPF1Q92900 ATP2A2-212ENST00000553144 264 ntTSL 1 (best)6.17□□□□□ -1.421e-6■■■■□ 24.1
UPF1Q92900 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.66■□□□□ 0.742e-7■■■■□ 24.1
UPF1Q92900 NFIX-201ENST00000358552 1727 ntTSL 5 BASIC15.94■□□□□ 0.142e-7■■■■□ 24.1
UPF1Q92900 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.964e-7■■■■□ 24.1
UPF1Q92900 FOXK2-212ENST00000624186 4244 nt12.16□□□□□ -0.464e-7■■■■□ 24.1
UPF1Q92900 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC18.61■□□□□ 0.579e-8■■■■□ 24.1
UPF1Q92900 DPH2-209ENST00000495421 2414 ntTSL 218.22■□□□□ 0.519e-8■■■■□ 24.1
UPF1Q92900 DPH2-201ENST00000255108 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.059e-8■■■■□ 24.1
UPF1Q92900 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.193e-28■■■■□ 24
UPF1Q92900 IFNAR2-205ENST00000404220 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.462e-6■■■■□ 24
UPF1Q92900 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.912e-6■■■■□ 24
UPF1Q92900 AP000295.1-202ENST00000432231 753 ntTSL 28.92□□□□□ -0.982e-6■■■■□ 24
UPF1Q92900 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.41■□□□□ 0.862e-14■■■■□ 24
UPF1Q92900 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.782e-14■■■■□ 24
UPF1Q92900 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.712e-14■■■■□ 24
UPF1Q92900 MFGE8-205ENST00000558018 1989 ntTSL 218.8■□□□□ 0.62e-14■■■■□ 24
UPF1Q92900 CD2BP2-201ENST00000305596 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.672e-7■■■■□ 24
UPF1Q92900 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.661e-8■■■■□ 24
UPF1Q92900 SPOP-202ENST00000393328 2985 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.511e-8■■■■□ 24
UPF1Q92900 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC22.98■■□□□ 1.273e-6■■■■□ 24
UPF1Q92900 MAP3K11-202ENST00000524848 2139 ntTSL 221.36■■□□□ 1.013e-6■■■■□ 24
UPF1Q92900 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.31■□□□□ 0.23e-6■■■■□ 24
UPF1Q92900 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.124e-12■■■■□ 24
UPF1Q92900 TRAFD1-202ENST00000412615 2697 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.514e-12■■■■□ 24
UPF1Q92900 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.372e-6■■■■□ 24
UPF1Q92900 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.372e-6■■■■□ 24
UPF1Q92900 MAU2-210ENST00000589637 555 ntTSL 220.49■□□□□ 0.872e-18■■■■□ 24
UPF1Q92900 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.232e-6■■■■□ 24
UPF1Q92900 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC26.48■■□□□ 1.838e-9■■■■□ 24
UPF1Q92900 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.378e-9■■■■□ 24
UPF1Q92900 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.71e-6■■■■□ 24
UPF1Q92900 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC9.62□□□□□ -0.878e-9■■■■□ 24
UPF1Q92900 SLC35E1-209ENST00000596387 446 ntTSL 59.62□□□□□ -0.878e-8■■■■□ 24
UPF1Q92900 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC46.86■■■■■ 5.091e-7■■■■□ 23.9
UPF1Q92900 SSSCA1-207ENST00000533115 1077 ntTSL 342.92■■■■■ 4.461e-7■■■■□ 23.9
UPF1Q92900 SSSCA1-202ENST00000526433 739 ntTSL 322.32■■□□□ 1.161e-7■■■■□ 23.9
UPF1Q92900 STAR-204ENST00000522050 748 ntTSL 523.18■■□□□ 1.32e-6■■■■□ 23.9
UPF1Q92900 RASSF4-211ENST00000489171 4350 ntTSL 1 (best)18.83■□□□□ 0.612e-6■■■■□ 23.9
UPF1Q92900 RASSF4-201ENST00000340258 3641 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.812e-6■■■■□ 23.9
UPF1Q92900 PHACTR4-202ENST00000373839 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.632e-8■■■■□ 23.9
UPF1Q92900 PHACTR4-207ENST00000632964 1853 ntTSL 26.15□□□□□ -1.432e-8■■■■□ 23.9
UPF1Q92900 PIGU-201ENST00000217446 1632 ntAPPRIS P2 TSL 1 (best)20.2■□□□□ 0.821e-6■■■■□ 23.9
UPF1Q92900 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.541e-6■■■■□ 23.9
UPF1Q92900 PCYT2-217ENST00000574343 693 ntTSL 225.34■■□□□ 1.651e-9■■■■□ 23.9
UPF1Q92900 PCYT2-212ENST00000572995 804 ntTSL 321.21■□□□□ 0.991e-9■■■■□ 23.9
UPF1Q92900 PRRC2B-208ENST00000465931 5366 ntTSL 212.5□□□□□ -0.413e-9■■■■□ 23.9
UPF1Q92900 PRRC2B-201ENST00000320547 4950 ntTSL 212.2□□□□□ -0.463e-9■■■■□ 23.9
UPF1Q92900 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.719e-8■■■■□ 23.9
UPF1Q92900 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC10.42□□□□□ -0.749e-8■■■■□ 23.9
UPF1Q92900 SLC38A5-209ENST00000497336 493 ntTSL 520.23■□□□□ 0.838e-8■■■■□ 23.9
UPF1Q92900 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.838e-8■■■■□ 23.9
UPF1Q92900 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.38e-8■■■■□ 23.9
UPF1Q92900 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.65□□□□□ -0.068e-8■■■■□ 23.9
UPF1Q92900 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.65□□□□□ -0.068e-8■■■■□ 23.9
UPF1Q92900 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.45□□□□□ -0.264e-9■■■■□ 23.9
UPF1Q92900 PDXK-209ENST00000467908 7194 ntTSL 3 BASIC12.14□□□□□ -0.474e-9■■■■□ 23.9
UPF1Q92900 PDXK-201ENST00000291565 7366 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.514e-9■■■■□ 23.9
UPF1Q92900 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.911e-6■■■■□ 23.8
UPF1Q92900 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC24.88■■□□□ 1.571e-6■■■■□ 23.8
UPF1Q92900 RANBP3-202ENST00000340578 3233 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.377e-7■■■■□ 23.8
UPF1Q92900 RANBP3-203ENST00000439268 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.667e-7■■■■□ 23.8
UPF1Q92900 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC29.79■■■□□ 2.366e-18■■■■□ 23.8
UPF1Q92900 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.023e-10■■■■□ 23.8
UPF1Q92900 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC21.39■■□□□ 1.021e-7■■■■□ 23.8
UPF1Q92900 BCL2L1-205ENST00000422920 1157 ntTSL 237.32■■■■□ 3.565e-7■■■■□ 23.8
UPF1Q92900 BCL2L1-208ENST00000450273 894 ntTSL 326.64■■□□□ 1.865e-7■■■■□ 23.8
UPF1Q92900 BCL2L1-209ENST00000456404 914 ntTSL 226.2■■□□□ 1.785e-7■■■■□ 23.8
UPF1Q92900 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC24.79■■□□□ 1.561e-7■■■■□ 23.8
UPF1Q92900 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.311e-7■■■■□ 23.8
UPF1Q92900 REEP4-207ENST00000523293 913 ntTSL 3 BASIC22.86■■□□□ 1.255e-7■■■■□ 23.8
UPF1Q92900 BCL2L1-207ENST00000439267 781 ntTSL 219.55■□□□□ 0.725e-7■■■■□ 23.8
UPF1Q92900 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.573e-8■■■■□ 23.8
UPF1Q92900 TOMM40L-202ENST00000367988 2708 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.135e-7■■■■□ 23.8
UPF1Q92900 BCL2L1-204ENST00000420488 820 ntTSL 215.64■□□□□ 0.095e-7■■■■□ 23.8
UPF1Q92900 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.025e-7■■■■□ 23.8
UPF1Q92900 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.021e-7■■■■□ 23.8
UPF1Q92900 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC14.69□□□□□ -0.065e-7■■■■□ 23.8
UPF1Q92900 TOMM40L-206ENST00000474486 2396 ntTSL 214.28□□□□□ -0.125e-7■■■■□ 23.8
UPF1Q92900 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.355e-7■■■■□ 23.8
UPF1Q92900 SERP1-203ENST00000479209 3934 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.421e-7■■■■□ 23.8
UPF1Q92900 SMARCC1-202ENST00000425518 3827 ntTSL 27.6□□□□□ -1.198e-12■■■■□ 23.8
UPF1Q92900 UBE2L3-203ENST00000496722 3451 ntTSL 213.71□□□□□ -0.214e-16■■■■□ 23.8
UPF1Q92900 UBE2L3-204ENST00000545681 2932 ntTSL 2 BASIC12.99□□□□□ -0.334e-16■■■■□ 23.8
Retrieved 100 of 15,879 protein–RNA pairs in 219.5 ms