RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NISCHQ9Y2I1 1504 aa25.86■■□□□ 1.73
SHMT1-205ENST00000395684 SHROOM4Q9ULL8 1493 aa22.25■■□□□ 1.15
SHMT1-205ENST00000395684 SUPT5HO00267 1087 aaKnown RBP21.92■■□□□ 1.1
SHMT1-205ENST00000395684 ZCCHC6Q5VYS8 1495 aaKnown RBP21.91■■□□□ 1.1
SHMT1-205ENST00000395684 CCDC180Q9P1Z9 1646 aa21.81■■□□□ 1.08
SHMT1-205ENST00000395684 DCAF8L2P0C7V8 631 aa21.45■■□□□ 1.02
SHMT1-205ENST00000395684 CHIC1Q5VXU3 224 aa21.42■■□□□ 1.02
SHMT1-205ENST00000395684 MYO15BQ96JP2 1530 aa21.38■■□□□ 1.01
SHMT1-205ENST00000395684 DCAF1Q9Y4B6 1507 aa21.18■□□□□ 0.98
SHMT1-205ENST00000395684 HRCP23327 699 aa21.08■□□□□ 0.96
SHMT1-205ENST00000395684 PCGF6Q9BYE7 350 aa20.95■□□□□ 0.94
SHMT1-205ENST00000395684 LOC105371045A0A1W2PR82 267 aa20.82■□□□□ 0.92
SHMT1-205ENST00000395684 ABCC9O60706 1549 aa20.69■□□□□ 0.9
SHMT1-205ENST00000395684 PPARGC1BQ86YN6 1023 aaKnown RBP20.65■□□□□ 0.9
SHMT1-205ENST00000395684 RSF1Q96T23 1441 aaPredicted RBP20.58■□□□□ 0.88
SHMT1-205ENST00000395684 SCRIBQ14160 1630 aa20.55■□□□□ 0.88
SHMT1-205ENST00000395684 TRIM26Q12899 539 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-205ENST00000395684 TRIM41Q8WV44 630 aa20.38■□□□□ 0.85
SHMT1-205ENST00000395684 RB1CC1Q8TDY2 1594 aa20.36■□□□□ 0.85
SHMT1-205ENST00000395684 FAM9AQ8IZU1 332 aaPredicted RBP20.25■□□□□ 0.83
SHMT1-205ENST00000395684 CECR2Q9BXF3 1484 aa20.21■□□□□ 0.83
SHMT1-205ENST00000395684 NACADO15069 1562 aa20.16■□□□□ 0.82
SHMT1-205ENST00000395684 MROH2BQ7Z745 1585 aa20.14■□□□□ 0.81
SHMT1-205ENST00000395684 EHMT2Q96KQ7 1210 aa20.09■□□□□ 0.81
SHMT1-205ENST00000395684 ZEB1P37275 1124 aaPredicted RBP20.08■□□□□ 0.81
SHMT1-205ENST00000395684 WIZO95785 1651 aa20.03■□□□□ 0.8
SHMT1-205ENST00000395684 BAZ1AQ9NRL2 1556 aaPredicted RBP19.88■□□□□ 0.77
SHMT1-205ENST00000395684 EIF4G1Q04637 1599 aaKnown RBP19.83■□□□□ 0.77
SHMT1-205ENST00000395684 TOP2AP11388 1531 aaKnown RBP19.69■□□□□ 0.74
SHMT1-205ENST00000395684 ABCC8Q09428 1581 aa19.67■□□□□ 0.74
SHMT1-205ENST00000395684 CCDC88BA6NC98 1476 aa19.66■□□□□ 0.74
SHMT1-205ENST00000395684 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.66■□□□□ 0.74
SHMT1-205ENST00000395684 SMARCA4P51532 1647 aa19.63■□□□□ 0.73
SHMT1-205ENST00000395684 SMARCA2P51531 1590 aa19.6■□□□□ 0.73
SHMT1-205ENST00000395684 CCER1Q8TC90 406 aaPredicted RBP19.58■□□□□ 0.73
SHMT1-205ENST00000395684 SCAF1Q9H7N4 1312 aaKnown RBP19.56■□□□□ 0.72
SHMT1-205ENST00000395684 SOGA1O94964 1423 aa19.55■□□□□ 0.72
SHMT1-205ENST00000395684 WRNQ14191 1432 aaPredicted RBP eCLIP19.55■□□□□ 0.72
SHMT1-205ENST00000395684 CEP162Q5TB80 1403 aa19.52■□□□□ 0.72
SHMT1-205ENST00000395684 UNC13AQ9UPW8 1703 aa19.5■□□□□ 0.71
SHMT1-205ENST00000395684 TTBK1Q5TCY1 1321 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-205ENST00000395684 TNIKQ9UKE5 1360 aa19.48■□□□□ 0.71
SHMT1-205ENST00000395684 RUSC2Q8N2Y8 1516 aa19.45■□□□□ 0.7
SHMT1-205ENST00000395684 CSRNP3Q8WYN3 585 aa19.45■□□□□ 0.7
SHMT1-205ENST00000395684 EEA1Q15075 1411 aa19.41■□□□□ 0.7
SHMT1-205ENST00000395684 UBTFP17480 764 aaKnown RBP19.38■□□□□ 0.69
SHMT1-205ENST00000395684 PABPN1Q86U42 306 aaKnown RBP eCLIP19.35■□□□□ 0.69
SHMT1-205ENST00000395684 DIEXFQ68CQ4 756 aaKnown RBP19.32■□□□□ 0.68
SHMT1-205ENST00000395684 GOLGA3Q08378 1498 aa19.3■□□□□ 0.68
SHMT1-205ENST00000395684 BICRAQ9NZM4 1560 aa19.29■□□□□ 0.68
SHMT1-205ENST00000395684 ACIN1Q9UKV3 1341 aaKnown RBP19.29■□□□□ 0.68
SHMT1-205ENST00000395684 PELP1Q8IZL8 1130 aaKnown RBP19.28■□□□□ 0.68
SHMT1-205ENST00000395684 NEUROD1Q13562 356 aa19.27■□□□□ 0.68
SHMT1-205ENST00000395684 PEG3Q9GZU2 1588 aa19.24■□□□□ 0.67
SHMT1-205ENST00000395684 SYNJ1O43426 1573 aa19.2■□□□□ 0.66
SHMT1-205ENST00000395684 CEP164Q9UPV0 1460 aa19.17■□□□□ 0.66
SHMT1-205ENST00000395684 KIF21BO75037 1637 aa19.13■□□□□ 0.65
SHMT1-205ENST00000395684 ZNF316A6NFI3 1004 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-205ENST00000395684 CLIP1P30622 1438 aa19.11■□□□□ 0.65
SHMT1-205ENST00000395684 ATAD2BQ9ULI0 1458 aa19.11■□□□□ 0.65
SHMT1-205ENST00000395684 CENPBP07199 599 aaPredicted RBP19.1■□□□□ 0.65
SHMT1-205ENST00000395684 HNRNPUL2Q1KMD3 747 aaKnown RBP19.09■□□□□ 0.65
SHMT1-205ENST00000395684 GTF3C3Q9Y5Q9 886 aa19.08■□□□□ 0.64
SHMT1-205ENST00000395684 VPS8Q8N3P4 1428 aa19.05■□□□□ 0.64
SHMT1-205ENST00000395684 BAZ1BQ9UIG0 1483 aaKnown RBP19.05■□□□□ 0.64
SHMT1-205ENST00000395684 RAPGEF2Q9Y4G8 1499 aa19.05■□□□□ 0.64
SHMT1-205ENST00000395684 RANGAP1P46060 587 aaPredicted RBP18.97■□□□□ 0.63
SHMT1-205ENST00000395684 APLP2Q06481 763 aa18.96■□□□□ 0.63
SHMT1-205ENST00000395684 TOP2BQ02880 1626 aa18.92■□□□□ 0.62
SHMT1-205ENST00000395684 MIER1Q8N108 512 aa18.9■□□□□ 0.62
SHMT1-205ENST00000395684 YTHDC1Q96MU7 727 aaKnown RBP18.88■□□□□ 0.61
SHMT1-205ENST00000395684 BIVM-ERCC5R4GMW8 1640 aa18.83■□□□□ 0.6
SHMT1-205ENST00000395684 PRXQ9BXM0 1461 aa18.83■□□□□ 0.6
SHMT1-205ENST00000395684 ERICH3Q5RHP9 1530 aa18.8■□□□□ 0.6
SHMT1-205ENST00000395684 ARAP1Q96P48 1450 aa18.79■□□□□ 0.6
SHMT1-205ENST00000395684 KANK4Q5T7N3 995 aaPredicted RBP18.77■□□□□ 0.6
SHMT1-205ENST00000395684 DHX57Q6P158 1386 aaKnown RBP18.74■□□□□ 0.59
SHMT1-205ENST00000395684 CLSPNQ9HAW4 1339 aa18.72■□□□□ 0.59
SHMT1-205ENST00000395684 CUX1P39880 1505 aa18.72■□□□□ 0.59
SHMT1-205ENST00000395684 NCAPD3P42695 1498 aa18.7■□□□□ 0.58
SHMT1-205ENST00000395684 KIF27Q86VH2 1401 aa18.67■□□□□ 0.58
SHMT1-205ENST00000395684 HMGXB3Q12766 1538 aa18.67■□□□□ 0.58
SHMT1-205ENST00000395684 RRBP1Q9P2E9 1410 aaKnown RBP18.65■□□□□ 0.58
SHMT1-205ENST00000395684 CFTRP13569 1480 aa18.61■□□□□ 0.57
SHMT1-205ENST00000395684 ARHGAP35Q9NRY4 1499 aa18.6■□□□□ 0.57
SHMT1-205ENST00000395684 CCNB3Q8WWL7 1395 aa18.56■□□□□ 0.56
SHMT1-205ENST00000395684 CUX2O14529 1486 aa18.56■□□□□ 0.56
SHMT1-205ENST00000395684 ITGAEP38570 1179 aa18.51■□□□□ 0.55
SHMT1-205ENST00000395684 IGF1RP08069 1367 aa18.5■□□□□ 0.55
SHMT1-205ENST00000395684 RAB3GAP2Q9H2M9 1393 aa18.43■□□□□ 0.54
SHMT1-205ENST00000395684 CARMIL1Q5VZK9 1371 aa18.4■□□□□ 0.54
SHMT1-205ENST00000395684 TIAM1Q13009 1591 aa18.4■□□□□ 0.54
SHMT1-205ENST00000395684 MAP3K1Q13233 1512 aa18.39■□□□□ 0.53
SHMT1-205ENST00000395684 MAPKBP1O60336 1514 aa18.39■□□□□ 0.53
SHMT1-205ENST00000395684 CADPSQ9ULU8 1353 aa18.37■□□□□ 0.53
SHMT1-205ENST00000395684 PRDM2Q13029 1718 aa18.37■□□□□ 0.53
SHMT1-205ENST00000395684 FGD5Q6ZNL6 1462 aa18.35■□□□□ 0.53
SHMT1-205ENST00000395684 LRRC9Q6ZRR7 1453 aa18.35■□□□□ 0.53
SHMT1-205ENST00000395684 PHLDB1Q86UU1 1377 aa18.35■□□□□ 0.53
SHMT1-205ENST00000395684 DNAJC5BQ9UF47 199 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms