Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 AC110285.5-201ENST00000611501 352 ntBASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 KRT8P36-201ENST00000489121 1440 ntBASIC21.12■□□□□ 0.97
SHKBP1Q8TBC3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 MIR2861-201ENST00000636310 90 ntBASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHKBP1Q8TBC3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SHKBP1Q8TBC3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SHKBP1Q8TBC3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 TSPY7P-201ENST00000431358 1114 ntBASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 AC073912.3-201ENST00000624414 853 ntBASIC21.08■□□□□ 0.97
SHKBP1Q8TBC3 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SHKBP1Q8TBC3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHKBP1Q8TBC3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.08■□□□□ 0.96
SHKBP1Q8TBC3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SHKBP1Q8TBC3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms