Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 HTR7P1-202ENST00000624664 4411 ntBASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CLRN3Q8NCR9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.02■□□□□ 0.16
CLRN3Q8NCR9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLRN3Q8NCR9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLRN3Q8NCR9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CLRN3Q8NCR9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLRN3Q8NCR9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLRN3Q8NCR9 AC079089.2-201ENST00000531211 1277 ntBASIC16■□□□□ 0.15
CLRN3Q8NCR9 DUX4L4-201ENST00000566884 1269 ntBASIC16■□□□□ 0.15
CLRN3Q8NCR9 HSD17B1P1-201ENST00000590052 955 ntBASIC16■□□□□ 0.15
CLRN3Q8NCR9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16■□□□□ 0.15
CLRN3Q8NCR9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16■□□□□ 0.15
CLRN3Q8NCR9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CLRN3Q8NCR9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLRN3Q8NCR9 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16■□□□□ 0.15
CLRN3Q8NCR9 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16■□□□□ 0.15
CLRN3Q8NCR9 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLRN3Q8NCR9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLRN3Q8NCR9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC16■□□□□ 0.15
CLRN3Q8NCR9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 GFER-205ENST00000569451 517 ntTSL 5 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 AC007029.1-201ENST00000604183 313 ntBASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 OR7E47P-201ENST00000546390 1422 ntBASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLRN3Q8NCR9 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms