Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CACNA1AO00555 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.12■□□□□ 0.65
CACNA1AO00555 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CACNA1AO00555 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.12■□□□□ 0.65
CACNA1AO00555 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 AL035633.1-201ENST00000406139 838 ntBASIC19.12■□□□□ 0.65
CACNA1AO00555 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.12■□□□□ 0.65
CACNA1AO00555 AL512604.3-201ENST00000569583 964 ntBASIC19.12■□□□□ 0.65
CACNA1AO00555 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.12■□□□□ 0.65
CACNA1AO00555 AL023803.3-201ENST00000615559 522 ntBASIC19.12■□□□□ 0.65
CACNA1AO00555 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 AC092053.2-201ENST00000640557 1818 ntBASIC19.12■□□□□ 0.65
CACNA1AO00555 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CACNA1AO00555 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
CACNA1AO00555 AC116050.2-201ENST00000612102 1779 ntBASIC19.11■□□□□ 0.65
CACNA1AO00555 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CACNA1AO00555 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CACNA1AO00555 AC120114.3-201ENST00000611923 658 ntBASIC19.11■□□□□ 0.65
CACNA1AO00555 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.11■□□□□ 0.65
CACNA1AO00555 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CACNA1AO00555 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CACNA1AO00555 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CACNA1AO00555 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CACNA1AO00555 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CACNA1AO00555 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CACNA1AO00555 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.11■□□□□ 0.65
CACNA1AO00555 AC027796.2-201ENST00000575326 344 ntBASIC19.11■□□□□ 0.65
CACNA1AO00555 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CACNA1AO00555 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.1■□□□□ 0.65
CACNA1AO00555 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.1■□□□□ 0.65
CACNA1AO00555 KRT18P38-201ENST00000449496 1282 ntBASIC19.1■□□□□ 0.65
CACNA1AO00555 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CACNA1AO00555 AL356652.1-201ENST00000615962 565 ntBASIC19.1■□□□□ 0.65
CACNA1AO00555 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CACNA1AO00555 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.1■□□□□ 0.65
CACNA1AO00555 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.1■□□□□ 0.65
CACNA1AO00555 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CACNA1AO00555 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CACNA1AO00555 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.1■□□□□ 0.65
CACNA1AO00555 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CACNA1AO00555 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CACNA1AO00555 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CACNA1AO00555 AC096733.2-201ENST00000609937 1394 ntBASIC19.09■□□□□ 0.65
CACNA1AO00555 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1AO00555 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.09■□□□□ 0.65
CACNA1AO00555 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1AO00555 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.09■□□□□ 0.65
CACNA1AO00555 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.09■□□□□ 0.65
CACNA1AO00555 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.09■□□□□ 0.65
CACNA1AO00555 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1AO00555 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CACNA1AO00555 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1AO00555 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CACNA1AO00555 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.09■□□□□ 0.65
CACNA1AO00555 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1AO00555 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CACNA1AO00555 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.09■□□□□ 0.65
CACNA1AO00555 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1AO00555 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CACNA1AO00555 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CACNA1AO00555 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1AO00555 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CACNA1AO00555 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.09■□□□□ 0.65
CACNA1AO00555 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.09■□□□□ 0.65
CACNA1AO00555 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CACNA1AO00555 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
CACNA1AO00555 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1AO00555 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.08■□□□□ 0.65
CACNA1AO00555 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1AO00555 AL732292.2-201ENST00000609649 430 ntBASIC19.08■□□□□ 0.65
CACNA1AO00555 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.08■□□□□ 0.65
CACNA1AO00555 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CACNA1AO00555 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.08■□□□□ 0.65
CACNA1AO00555 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1AO00555 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1AO00555 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.08■□□□□ 0.64
CACNA1AO00555 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1AO00555 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.08■□□□□ 0.64
CACNA1AO00555 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CACNA1AO00555 AC087742.1-201ENST00000575880 1738 ntBASIC19.08■□□□□ 0.64
CACNA1AO00555 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
CACNA1AO00555 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1AO00555 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1AO00555 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1AO00555 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CACNA1AO00555 MIR574-201ENST00000385209 96 ntBASIC19.07■□□□□ 0.64
CACNA1AO00555 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.07■□□□□ 0.64
CACNA1AO00555 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1AO00555 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.07■□□□□ 0.64
CACNA1AO00555 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.07■□□□□ 0.64
CACNA1AO00555 AL023973.1-201ENST00000624619 620 ntBASIC19.07■□□□□ 0.64
CACNA1AO00555 HLA-A-201ENST00000376802 1334 ntBASIC19.07■□□□□ 0.64
CACNA1AO00555 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1AO00555 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms