Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 KRT8P36-201ENST00000489121 1440 ntBASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SLC44A3Q8N4M1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 SLC25A3P1-201ENST00000443844 931 ntBASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 KSR1P1-201ENST00000446298 240 ntBASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 AC104076.2-201ENST00000448912 469 ntBASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.67■□□□□ 0.9
SLC44A3Q8N4M1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 DUX4L26-201ENST00000489078 1255 ntBASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 NTF6B-201ENST00000591913 560 ntBASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC44A3Q8N4M1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 AC242852.2-201ENST00000615738 1807 ntBASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 AC027702.1-201ENST00000563810 1770 ntBASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC44A3Q8N4M1 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.64■□□□□ 0.9
SLC44A3Q8N4M1 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.64■□□□□ 0.9
SLC44A3Q8N4M1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SLC44A3Q8N4M1 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SLC44A3Q8N4M1 NIFKP9-201ENST00000419265 221 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms