Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.71■□□□□ 0.59
CDH12P55289 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH12P55289 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH12P55289 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CDH12P55289 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH12P55289 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH12P55289 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDH12P55289 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CDH12P55289 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
CDH12P55289 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CDH12P55289 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH12P55289 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CDH12P55289 AIRN-201ENST00000601203 4374 ntBASIC18.7■□□□□ 0.58
CDH12P55289 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH12P55289 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH12P55289 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.7■□□□□ 0.58
CDH12P55289 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.7■□□□□ 0.58
CDH12P55289 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CDH12P55289 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CDH12P55289 KRT19P1-201ENST00000405746 1186 ntBASIC18.7■□□□□ 0.58
CDH12P55289 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.7■□□□□ 0.58
CDH12P55289 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.7■□□□□ 0.58
CDH12P55289 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.7■□□□□ 0.58
CDH12P55289 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.7■□□□□ 0.58
CDH12P55289 SLC7A5P1-201ENST00000568957 537 ntBASIC18.7■□□□□ 0.58
CDH12P55289 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH12P55289 RBM17P2-201ENST00000616397 1405 ntBASIC18.7■□□□□ 0.58
CDH12P55289 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.7■□□□□ 0.58
CDH12P55289 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH12P55289 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CDH12P55289 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.7■□□□□ 0.58
CDH12P55289 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CDH12P55289 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDH12P55289 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CDH12P55289 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CDH12P55289 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CDH12P55289 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 AC091799.1-201ENST00000422823 811 ntBASIC18.69■□□□□ 0.58
CDH12P55289 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.69■□□□□ 0.58
CDH12P55289 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CDH12P55289 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH12P55289 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH12P55289 AC243732.1-201ENST00000612648 864 ntBASIC18.69■□□□□ 0.58
CDH12P55289 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH12P55289 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CDH12P55289 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH12P55289 AC019069.1-201ENST00000610008 1333 ntBASIC18.69■□□□□ 0.58
CDH12P55289 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.69■□□□□ 0.58
CDH12P55289 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH12P55289 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CDH12P55289 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CDH12P55289 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH12P55289 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH12P55289 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CDH12P55289 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.68■□□□□ 0.58
CDH12P55289 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH12P55289 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH12P55289 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH12P55289 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH12P55289 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH12P55289 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH12P55289 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH12P55289 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH12P55289 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH12P55289 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH12P55289 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH12P55289 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH12P55289 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.67■□□□□ 0.58
CDH12P55289 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH12P55289 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH12P55289 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH12P55289 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CDH12P55289 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
CDH12P55289 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH12P55289 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH12P55289 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDH12P55289 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH12P55289 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms