Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MKS1Q9NXB0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MKS1Q9NXB0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MKS1Q9NXB0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MKS1Q9NXB0 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.93■□□□□ 0.78
MKS1Q9NXB0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
MKS1Q9NXB0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
MKS1Q9NXB0 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MKS1Q9NXB0 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 Z82202.1-201ENST00000623446 1880 ntBASIC19.92■□□□□ 0.78
MKS1Q9NXB0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.92■□□□□ 0.78
MKS1Q9NXB0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 AC097381.1-201ENST00000429019 1296 ntBASIC19.92■□□□□ 0.78
MKS1Q9NXB0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MKS1Q9NXB0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MKS1Q9NXB0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 LINC02228-203ENST00000641970 1355 ntBASIC19.9■□□□□ 0.78
MKS1Q9NXB0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MKS1Q9NXB0 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
MKS1Q9NXB0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
MKS1Q9NXB0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 PGM5P4-201ENST00000421970 445 ntBASIC19.89■□□□□ 0.77
MKS1Q9NXB0 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 AC087633.2-202ENST00000565166 1439 ntBASIC19.89■□□□□ 0.77
MKS1Q9NXB0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MKS1Q9NXB0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 AC019069.1-201ENST00000610008 1333 ntBASIC19.88■□□□□ 0.77
MKS1Q9NXB0 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 CDV3P1-201ENST00000471403 739 ntBASIC19.88■□□□□ 0.77
MKS1Q9NXB0 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.88■□□□□ 0.77
MKS1Q9NXB0 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MKS1Q9NXB0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
MKS1Q9NXB0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MKS1Q9NXB0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MKS1Q9NXB0 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.87■□□□□ 0.77
MKS1Q9NXB0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
MKS1Q9NXB0 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.87■□□□□ 0.77
MKS1Q9NXB0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
MKS1Q9NXB0 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MKS1Q9NXB0 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms