Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
ZCCHC3Q9NUD5 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZCCHC3Q9NUD5 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 AC022517.1-201ENST00000592429 346 ntBASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 AC231657.2-201ENST00000624556 255 ntBASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.94■□□□□ 0.62
ZCCHC3Q9NUD5 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 CYP2T1P-201ENST00000432607 1285 ntBASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZCCHC3Q9NUD5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 MCRIP2P1-201ENST00000394346 511 ntBASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 AC007322.1-201ENST00000426983 750 ntBASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 AC069236.1-201ENST00000604339 616 ntBASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 AC100791.3-201ENST00000617619 330 ntBASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
ZCCHC3Q9NUD5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.91■□□□□ 0.62
ZCCHC3Q9NUD5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms