Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AL049796.1-201ENST00000565336 1766 ntBASIC18.42■□□□□ 0.54
DDX28Q9NUL7 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DDX28Q9NUL7 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DDX28Q9NUL7 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DDX28Q9NUL7 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DDX28Q9NUL7 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
DDX28Q9NUL7 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 TPRG1LP1-201ENST00000598702 760 ntBASIC18.41■□□□□ 0.54
DDX28Q9NUL7 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
DDX28Q9NUL7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
DDX28Q9NUL7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
DDX28Q9NUL7 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
DDX28Q9NUL7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
DDX28Q9NUL7 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.39■□□□□ 0.54
DDX28Q9NUL7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
DDX28Q9NUL7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms