Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 RNA5SP413-201ENST00000516373 109 ntBASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 HLA-B-256ENST00000639848 1089 ntBASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TRIM39Q9HCM9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
TRIM39Q9HCM9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRIM39Q9HCM9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
TRIM39Q9HCM9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM39Q9HCM9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20■□□□□ 0.79
TRIM39Q9HCM9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
TRIM39Q9HCM9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20■□□□□ 0.79
TRIM39Q9HCM9 AC060766.5-201ENST00000590539 871 ntBASIC20■□□□□ 0.79
TRIM39Q9HCM9 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20■□□□□ 0.79
TRIM39Q9HCM9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
TRIM39Q9HCM9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM39Q9HCM9 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.99■□□□□ 0.79
TRIM39Q9HCM9 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM39Q9HCM9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 AC092368.3-202ENST00000574180 1591 ntBASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
TRIM39Q9HCM9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms