Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL39P62891 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL39P62891 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL39P62891 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
RPL39P62891 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL39P62891 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC14.26□□□□□ -0.13
RPL39P62891 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RPL39P62891 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 AC005332.7-201ENST00000614046 2005 ntBASIC14.25□□□□□ -0.13
RPL39P62891 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 BX842568.3-201ENST00000418104 571 ntBASIC14.25□□□□□ -0.13
RPL39P62891 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC14.25□□□□□ -0.13
RPL39P62891 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
RPL39P62891 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC14.25□□□□□ -0.13
RPL39P62891 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
RPL39P62891 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL39P62891 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL39P62891 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
RPL39P62891 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC14.24□□□□□ -0.13
RPL39P62891 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL39P62891 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC14.24□□□□□ -0.13
RPL39P62891 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 GUSBP5-201ENST00000418136 578 ntBASIC14.24□□□□□ -0.13
RPL39P62891 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC14.24□□□□□ -0.13
RPL39P62891 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC14.24□□□□□ -0.13
RPL39P62891 AC126544.1-201ENST00000580842 1059 ntBASIC14.24□□□□□ -0.13
RPL39P62891 TRIR-202ENST00000588213 841 ntTSL 3 BASIC14.24□□□□□ -0.13
RPL39P62891 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL39P62891 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
RPL39P62891 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC14.24□□□□□ -0.13
RPL39P62891 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
RPL39P62891 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
RPL39P62891 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL39P62891 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL39P62891 POLI-202ENST00000406285 2030 ntTSL 2 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms