Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.21■□□□□ 0.51
LSM3P62310 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LSM3P62310 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LSM3P62310 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.21■□□□□ 0.5
LSM3P62310 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LSM3P62310 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.2■□□□□ 0.5
LSM3P62310 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.2■□□□□ 0.5
LSM3P62310 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.2■□□□□ 0.5
LSM3P62310 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.2■□□□□ 0.5
LSM3P62310 ATP5G2P3-201ENST00000429083 425 ntBASIC18.2■□□□□ 0.5
LSM3P62310 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
LSM3P62310 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.2■□□□□ 0.5
LSM3P62310 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.2■□□□□ 0.5
LSM3P62310 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LSM3P62310 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM3P62310 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.2■□□□□ 0.5
LSM3P62310 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LSM3P62310 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
LSM3P62310 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM3P62310 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM3P62310 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LSM3P62310 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM3P62310 KRT8P33-201ENST00000508125 1423 ntBASIC18.19■□□□□ 0.5
LSM3P62310 AC103834.1-201ENST00000520383 144 ntBASIC18.19■□□□□ 0.5
LSM3P62310 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.19■□□□□ 0.5
LSM3P62310 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.19■□□□□ 0.5
LSM3P62310 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.19■□□□□ 0.5
LSM3P62310 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM3P62310 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM3P62310 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM3P62310 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
LSM3P62310 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM3P62310 AC011484.1-201ENST00000377652 1995 ntBASIC18.19■□□□□ 0.5
LSM3P62310 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
LSM3P62310 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
LSM3P62310 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM3P62310 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.18■□□□□ 0.5
LSM3P62310 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
LSM3P62310 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.18■□□□□ 0.5
LSM3P62310 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 AC241377.3-202ENST00000626088 1088 ntBASIC18.18■□□□□ 0.5
LSM3P62310 AC241585.3-202ENST00000628937 1088 ntBASIC18.18■□□□□ 0.5
LSM3P62310 AC245100.8-202ENST00000629247 1058 ntBASIC18.18■□□□□ 0.5
LSM3P62310 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM3P62310 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM3P62310 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM3P62310 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LSM3P62310 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM3P62310 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM3P62310 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM3P62310 BX005040.4-201ENST00000637145 1518 ntBASIC18.18■□□□□ 0.5
LSM3P62310 AL049812.1-201ENST00000432563 2267 ntBASIC18.18■□□□□ 0.5
LSM3P62310 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.17■□□□□ 0.5
LSM3P62310 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM3P62310 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM3P62310 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.17■□□□□ 0.5
LSM3P62310 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM3P62310 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM3P62310 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LSM3P62310 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM3P62310 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM3P62310 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM3P62310 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms