Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMK1P53667 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMK1P53667 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMK1P53667 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMK1P53667 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMK1P53667 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMK1P53667 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMK1P53667 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMK1P53667 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LIMK1P53667 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMK1P53667 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMK1P53667 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LIMK1P53667 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMK1P53667 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LIMK1P53667 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
LIMK1P53667 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.02■□□□□ 0.8
LIMK1P53667 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LIMK1P53667 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.02■□□□□ 0.8
LIMK1P53667 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.02■□□□□ 0.8
LIMK1P53667 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMK1P53667 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.02■□□□□ 0.8
LIMK1P53667 AC003102.1-202ENST00000563394 1796 ntBASIC20.02■□□□□ 0.8
LIMK1P53667 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LIMK1P53667 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIMK1P53667 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.02■□□□□ 0.8
LIMK1P53667 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIMK1P53667 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.02■□□□□ 0.79
LIMK1P53667 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.02■□□□□ 0.79
LIMK1P53667 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
LIMK1P53667 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LIMK1P53667 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.02■□□□□ 0.79
LIMK1P53667 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIMK1P53667 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMK1P53667 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMK1P53667 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.01■□□□□ 0.79
LIMK1P53667 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LIMK1P53667 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.01■□□□□ 0.79
LIMK1P53667 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMK1P53667 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LIMK1P53667 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.01■□□□□ 0.79
LIMK1P53667 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.01■□□□□ 0.79
LIMK1P53667 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.01■□□□□ 0.79
LIMK1P53667 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
LIMK1P53667 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMK1P53667 AC006557.6-201ENST00000623071 864 ntBASIC20.01■□□□□ 0.79
LIMK1P53667 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.01■□□□□ 0.79
LIMK1P53667 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMK1P53667 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
LIMK1P53667 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMK1P53667 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMK1P53667 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20■□□□□ 0.79
LIMK1P53667 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20■□□□□ 0.79
LIMK1P53667 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
LIMK1P53667 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 AL390719.1-204ENST00000412397 1219 ntBASIC20■□□□□ 0.79
LIMK1P53667 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20■□□□□ 0.79
LIMK1P53667 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
LIMK1P53667 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
LIMK1P53667 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20■□□□□ 0.79
LIMK1P53667 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LIMK1P53667 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20■□□□□ 0.79
LIMK1P53667 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20■□□□□ 0.79
LIMK1P53667 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20■□□□□ 0.79
LIMK1P53667 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20■□□□□ 0.79
LIMK1P53667 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
LIMK1P53667 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 RBM17P1-201ENST00000453646 1190 ntBASIC19.99■□□□□ 0.79
LIMK1P53667 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.99■□□□□ 0.79
LIMK1P53667 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.99■□□□□ 0.79
LIMK1P53667 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
LIMK1P53667 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.99■□□□□ 0.79
LIMK1P53667 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.99■□□□□ 0.79
LIMK1P53667 HTR7P1-201ENST00000538670 1336 ntBASIC19.99■□□□□ 0.79
LIMK1P53667 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIMK1P53667 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
LIMK1P53667 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.98■□□□□ 0.79
LIMK1P53667 LINC01568-207ENST00000641790 1380 ntBASIC19.98■□□□□ 0.79
LIMK1P53667 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.98■□□□□ 0.79
LIMK1P53667 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms