Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
CXCL12P48061 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
CXCL12P48061 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.25■□□□□ 0.83
CXCL12P48061 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL12P48061 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL12P48061 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.24■□□□□ 0.83
CXCL12P48061 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CXCL12P48061 AL390955.1-201ENST00000428694 934 ntBASIC20.24■□□□□ 0.83
CXCL12P48061 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.24■□□□□ 0.83
CXCL12P48061 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.24■□□□□ 0.83
CXCL12P48061 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CXCL12P48061 AC010947.1-201ENST00000623454 693 ntBASIC20.24■□□□□ 0.83
CXCL12P48061 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.24■□□□□ 0.83
CXCL12P48061 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CXCL12P48061 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.23■□□□□ 0.83
CXCL12P48061 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.23■□□□□ 0.83
CXCL12P48061 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 SLC25A3P1-201ENST00000443844 931 ntBASIC20.23■□□□□ 0.83
CXCL12P48061 KSR1P1-201ENST00000446298 240 ntBASIC20.23■□□□□ 0.83
CXCL12P48061 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.23■□□□□ 0.83
CXCL12P48061 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
CXCL12P48061 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.23■□□□□ 0.83
CXCL12P48061 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.23■□□□□ 0.83
CXCL12P48061 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
CXCL12P48061 AC073508.3-201ENST00000619697 1419 ntBASIC20.23■□□□□ 0.83
CXCL12P48061 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.23■□□□□ 0.83
CXCL12P48061 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CXCL12P48061 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CXCL12P48061 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.22■□□□□ 0.83
CXCL12P48061 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.22■□□□□ 0.83
CXCL12P48061 DUX4L26-201ENST00000489078 1255 ntBASIC20.22■□□□□ 0.83
CXCL12P48061 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.22■□□□□ 0.83
CXCL12P48061 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.22■□□□□ 0.83
CXCL12P48061 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.22■□□□□ 0.83
CXCL12P48061 NTF6B-201ENST00000591913 560 ntBASIC20.22■□□□□ 0.83
CXCL12P48061 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CXCL12P48061 AC011484.1-201ENST00000377652 1995 ntBASIC20.22■□□□□ 0.83
CXCL12P48061 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CXCL12P48061 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.22■□□□□ 0.83
CXCL12P48061 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CXCL12P48061 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CXCL12P48061 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.22■□□□□ 0.83
CXCL12P48061 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CXCL12P48061 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CXCL12P48061 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.22■□□□□ 0.83
CXCL12P48061 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CXCL12P48061 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.21■□□□□ 0.83
CXCL12P48061 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CXCL12P48061 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.21■□□□□ 0.83
CXCL12P48061 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CXCL12P48061 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CXCL12P48061 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CXCL12P48061 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CXCL12P48061 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CXCL12P48061 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CXCL12P48061 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CXCL12P48061 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CXCL12P48061 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
CXCL12P48061 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CXCL12P48061 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CXCL12P48061 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.2■□□□□ 0.82
CXCL12P48061 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.2■□□□□ 0.82
CXCL12P48061 AC087388.1-201ENST00000571370 1112 ntBASIC20.2■□□□□ 0.82
CXCL12P48061 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.2■□□□□ 0.82
CXCL12P48061 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.2■□□□□ 0.82
CXCL12P48061 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.2■□□□□ 0.82
CXCL12P48061 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CXCL12P48061 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
CXCL12P48061 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CXCL12P48061 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CXCL12P48061 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CXCL12P48061 KRT16P1-201ENST00000399124 1418 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms