Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMS3P0CW19 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMS3P0CW19 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.96■□□□□ 0.47
LIMS3P0CW19 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LIMS3P0CW19 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LIMS3P0CW19 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMS3P0CW19 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMS3P0CW19 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LIMS3P0CW19 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 AC138907.5-202ENST00000569484 235 ntBASIC17.95■□□□□ 0.46
LIMS3P0CW19 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMS3P0CW19 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMS3P0CW19 KRT87P-202ENST00000534226 1464 ntBASIC17.95■□□□□ 0.46
LIMS3P0CW19 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.94■□□□□ 0.46
LIMS3P0CW19 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMS3P0CW19 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LIMS3P0CW19 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LIMS3P0CW19 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.94■□□□□ 0.46
LIMS3P0CW19 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMS3P0CW19 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMS3P0CW19 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LIMS3P0CW19 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMS3P0CW19 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMS3P0CW19 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMS3P0CW19 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMS3P0CW19 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMS3P0CW19 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMS3P0CW19 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.92■□□□□ 0.46
LIMS3P0CW19 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMS3P0CW19 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMS3P0CW19 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMS3P0CW19 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms