Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHOX2O60902 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHOX2O60902 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHOX2O60902 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.27■□□□□ 0.84
SHOX2O60902 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SHOX2O60902 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.27■□□□□ 0.84
SHOX2O60902 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHOX2O60902 AC055733.4-201ENST00000638462 1354 ntBASIC20.27■□□□□ 0.84
SHOX2O60902 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHOX2O60902 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.27■□□□□ 0.84
SHOX2O60902 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHOX2O60902 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SHOX2O60902 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHOX2O60902 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
SHOX2O60902 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHOX2O60902 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHOX2O60902 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.26■□□□□ 0.83
SHOX2O60902 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHOX2O60902 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SHOX2O60902 AC092028.1-203ENST00000608262 953 ntBASIC20.26■□□□□ 0.83
SHOX2O60902 AC241377.3-202ENST00000626088 1088 ntBASIC20.26■□□□□ 0.83
SHOX2O60902 AC241585.3-202ENST00000628937 1088 ntBASIC20.26■□□□□ 0.83
SHOX2O60902 AC245100.8-202ENST00000629247 1058 ntBASIC20.26■□□□□ 0.83
SHOX2O60902 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHOX2O60902 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHOX2O60902 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SHOX2O60902 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHOX2O60902 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
SHOX2O60902 NOC2LP1-202ENST00000452600 2235 ntBASIC20.26■□□□□ 0.83
SHOX2O60902 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHOX2O60902 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SHOX2O60902 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHOX2O60902 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.25■□□□□ 0.83
SHOX2O60902 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHOX2O60902 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SHOX2O60902 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.25■□□□□ 0.83
SHOX2O60902 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SHOX2O60902 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHOX2O60902 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.25■□□□□ 0.83
SHOX2O60902 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.25■□□□□ 0.83
SHOX2O60902 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SHOX2O60902 pRNA.6-201ENST00000610482 90 ntBASIC20.25■□□□□ 0.83
SHOX2O60902 pRNA.5-201ENST00000612139 90 ntBASIC20.25■□□□□ 0.83
SHOX2O60902 pRNA.11-201ENST00000618423 90 ntBASIC20.25■□□□□ 0.83
SHOX2O60902 pRNA.13-201ENST00000619112 90 ntBASIC20.25■□□□□ 0.83
SHOX2O60902 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SHOX2O60902 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
SHOX2O60902 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHOX2O60902 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SHOX2O60902 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.25■□□□□ 0.83
SHOX2O60902 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHOX2O60902 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHOX2O60902 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.24■□□□□ 0.83
SHOX2O60902 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.24■□□□□ 0.83
SHOX2O60902 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SHOX2O60902 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SHOX2O60902 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.24■□□□□ 0.83
SHOX2O60902 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 NOC2LP2-201ENST00000407594 1944 ntBASIC20.24■□□□□ 0.83
SHOX2O60902 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.24■□□□□ 0.83
SHOX2O60902 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SHOX2O60902 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.24■□□□□ 0.83
SHOX2O60902 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.24■□□□□ 0.83
SHOX2O60902 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.24■□□□□ 0.83
SHOX2O60902 BX119927.1-201ENST00000636596 1552 ntBASIC20.24■□□□□ 0.83
SHOX2O60902 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.24■□□□□ 0.83
SHOX2O60902 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.24■□□□□ 0.83
SHOX2O60902 AC018470.1-201ENST00000624790 3129 ntBASIC20.24■□□□□ 0.83
SHOX2O60902 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHOX2O60902 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.23■□□□□ 0.83
SHOX2O60902 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHOX2O60902 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHOX2O60902 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHOX2O60902 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHOX2O60902 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHOX2O60902 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.23■□□□□ 0.83
SHOX2O60902 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHOX2O60902 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.23■□□□□ 0.83
SHOX2O60902 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.23■□□□□ 0.83
SHOX2O60902 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.23■□□□□ 0.83
SHOX2O60902 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SHOX2O60902 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SHOX2O60902 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHOX2O60902 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SHOX2O60902 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
SHOX2O60902 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.23■□□□□ 0.83
SHOX2O60902 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.22■□□□□ 0.83
SHOX2O60902 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHOX2O60902 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHOX2O60902 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHOX2O60902 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.22■□□□□ 0.83
SHOX2O60902 KRT125P-201ENST00000546827 989 ntBASIC20.22■□□□□ 0.83
SHOX2O60902 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms