Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 BX119927.1-201ENST00000636596 1552 ntBASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 AC004987.1-201ENST00000428627 508 ntBASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 MIR2861-201ENST00000636310 90 ntBASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV1-1A0A0B4J248 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
TRAV1-1A0A0B4J248 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 AL032819.2-201ENST00000624543 2162 ntBASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 YBX1P4-201ENST00000392794 808 ntBASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 RNF146-206ENST00000480444 843 ntTSL 2 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 AL031848.2-201ENST00000607670 837 ntBASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 CROCCP3-202ENST00000420820 1947 ntBASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.78■□□□□ 0.12
TRAV1-1A0A0B4J248 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms