Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDX2Q99626 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CDX2Q99626 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.47■■□□□ 1.03
CDX2Q99626 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDX2Q99626 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.46■■□□□ 1.03
CDX2Q99626 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDX2Q99626 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDX2Q99626 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.46■■□□□ 1.03
CDX2Q99626 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CDX2Q99626 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDX2Q99626 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDX2Q99626 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.46■■□□□ 1.03
CDX2Q99626 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDX2Q99626 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.46■■□□□ 1.03
CDX2Q99626 AC012313.10-201ENST00000623509 926 ntBASIC21.46■■□□□ 1.03
CDX2Q99626 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.46■■□□□ 1.03
CDX2Q99626 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.46■■□□□ 1.03
CDX2Q99626 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDX2Q99626 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CDX2Q99626 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.45■■□□□ 1.02
CDX2Q99626 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX2Q99626 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX2Q99626 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.45■■□□□ 1.02
CDX2Q99626 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX2Q99626 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX2Q99626 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.45■■□□□ 1.02
CDX2Q99626 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.45■■□□□ 1.02
CDX2Q99626 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.45■■□□□ 1.02
CDX2Q99626 AL138966.2-201ENST00000621997 464 ntBASIC21.45■■□□□ 1.02
CDX2Q99626 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.45■■□□□ 1.02
CDX2Q99626 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CDX2Q99626 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX2Q99626 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDX2Q99626 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.45■■□□□ 1.02
CDX2Q99626 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.44■■□□□ 1.02
CDX2Q99626 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CDX2Q99626 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.44■■□□□ 1.02
CDX2Q99626 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 AC023511.2-201ENST00000618803 211 ntBASIC21.44■■□□□ 1.02
CDX2Q99626 AL121906.2-201ENST00000621597 723 ntBASIC21.44■■□□□ 1.02
CDX2Q99626 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.44■■□□□ 1.02
CDX2Q99626 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.44■■□□□ 1.02
CDX2Q99626 FSCN1P1-201ENST00000568912 1481 ntBASIC21.44■■□□□ 1.02
CDX2Q99626 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CDX2Q99626 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDX2Q99626 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.43■■□□□ 1.02
CDX2Q99626 MESTP1-201ENST00000404287 994 ntBASIC21.43■■□□□ 1.02
CDX2Q99626 HMGA1P5-201ENST00000412453 271 ntBASIC21.43■■□□□ 1.02
CDX2Q99626 FDX1P1-201ENST00000449115 551 ntBASIC21.43■■□□□ 1.02
CDX2Q99626 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.43■■□□□ 1.02
CDX2Q99626 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.43■■□□□ 1.02
CDX2Q99626 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDX2Q99626 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.43■■□□□ 1.02
CDX2Q99626 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.43■■□□□ 1.02
CDX2Q99626 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CDX2Q99626 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CDX2Q99626 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CDX2Q99626 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.43■■□□□ 1.02
CDX2Q99626 AC087742.1-201ENST00000575880 1738 ntBASIC21.43■■□□□ 1.02
CDX2Q99626 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.43■■□□□ 1.02
CDX2Q99626 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.43■■□□□ 1.02
CDX2Q99626 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX2Q99626 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.42■■□□□ 1.02
CDX2Q99626 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX2Q99626 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX2Q99626 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX2Q99626 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CDX2Q99626 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.42■■□□□ 1.02
CDX2Q99626 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.42■■□□□ 1.02
CDX2Q99626 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.42■■□□□ 1.02
CDX2Q99626 KRT18P16-201ENST00000510337 1294 ntBASIC21.42■■□□□ 1.02
CDX2Q99626 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
CDX2Q99626 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.42■■□□□ 1.02
CDX2Q99626 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CDX2Q99626 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.42■■□□□ 1.02
CDX2Q99626 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.42■■□□□ 1.02
CDX2Q99626 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.42■■□□□ 1.02
CDX2Q99626 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
CDX2Q99626 AL031985.4-201ENST00000642138 673 ntBASIC21.42■■□□□ 1.02
CDX2Q99626 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.42■■□□□ 1.02
CDX2Q99626 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDX2Q99626 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.41■■□□□ 1.02
CDX2Q99626 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CDX2Q99626 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.41■■□□□ 1.02
CDX2Q99626 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDX2Q99626 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDX2Q99626 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CDX2Q99626 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.41■■□□□ 1.02
CDX2Q99626 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.41■■□□□ 1.02
CDX2Q99626 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CDX2Q99626 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms