Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 HCG4P8-203ENST00000443049 980 ntBASIC20.21■□□□□ 0.83
VPS13AQ96RL7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 C1orf229-201ENST00000623686 2258 ntBASIC20.21■□□□□ 0.83
VPS13AQ96RL7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 AC116562.2-201ENST00000507042 360 ntBASIC20.21■□□□□ 0.83
VPS13AQ96RL7 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
VPS13AQ96RL7 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 AP000347.1-202ENST00000435868 847 ntBASIC20.2■□□□□ 0.82
VPS13AQ96RL7 GPALPP1-207ENST00000611650 899 ntBASIC20.2■□□□□ 0.82
VPS13AQ96RL7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.2■□□□□ 0.82
VPS13AQ96RL7 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 NBPF21P-201ENST00000425093 1451 ntBASIC20.19■□□□□ 0.82
VPS13AQ96RL7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 INGX-201ENST00000359239 846 ntBASIC20.19■□□□□ 0.82
VPS13AQ96RL7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS13AQ96RL7 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 KRT16P1-201ENST00000399124 1418 ntBASIC20.18■□□□□ 0.82
VPS13AQ96RL7 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 ATP5G1P1-201ENST00000448724 379 ntBASIC20.18■□□□□ 0.82
VPS13AQ96RL7 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.18■□□□□ 0.82
VPS13AQ96RL7 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.17■□□□□ 0.82
VPS13AQ96RL7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms