Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PDLIM3Q53GG5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 AC073314.1-201ENST00000568729 2216 ntBASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 SLC29A4P1-201ENST00000398760 971 ntBASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 AC121338.2-201ENST00000622535 1744 ntBASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.73■□□□□ 0.27
PDLIM3Q53GG5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 KRT19P1-201ENST00000405746 1186 ntBASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 AL596275.1-201ENST00000423464 877 ntBASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 ASL-203ENST00000380839 1765 ntTSL 5 BASIC16.72■□□□□ 0.27
PDLIM3Q53GG5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 AC055733.4-201ENST00000638462 1354 ntBASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDLIM3Q53GG5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.71■□□□□ 0.26
PDLIM3Q53GG5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
PDLIM3Q53GG5 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
PDLIM3Q53GG5 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 GUSBP6-202ENST00000438529 1198 ntBASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 AC133041.1-202ENST00000642053 222 ntBASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDLIM3Q53GG5 AC090340.1-201ENST00000620778 4980 ntBASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms