Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SNX3O60493 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.95■□□□□ 0.78
SNX3O60493 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SNX3O60493 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SNX3O60493 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SNX3O60493 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SNX3O60493 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SNX3O60493 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SNX3O60493 SYT6-210ENST00000641643 1587 ntBASIC19.95■□□□□ 0.78
SNX3O60493 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
SNX3O60493 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.95■□□□□ 0.78
SNX3O60493 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SNX3O60493 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.95■□□□□ 0.78
SNX3O60493 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SNX3O60493 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SNX3O60493 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.94■□□□□ 0.78
SNX3O60493 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.94■□□□□ 0.78
SNX3O60493 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.94■□□□□ 0.78
SNX3O60493 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.94■□□□□ 0.78
SNX3O60493 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 AL049812.1-201ENST00000432563 2267 ntBASIC19.94■□□□□ 0.78
SNX3O60493 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
SNX3O60493 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.94■□□□□ 0.78
SNX3O60493 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SNX3O60493 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.94■□□□□ 0.78
SNX3O60493 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SNX3O60493 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.94■□□□□ 0.78
SNX3O60493 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SNX3O60493 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.94■□□□□ 0.78
SNX3O60493 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SNX3O60493 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
SNX3O60493 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 AL033527.3-201ENST00000566366 1196 ntBASIC19.93■□□□□ 0.78
SNX3O60493 MIR2861-201ENST00000636310 90 ntBASIC19.93■□□□□ 0.78
SNX3O60493 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SNX3O60493 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.92■□□□□ 0.78
SNX3O60493 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.92■□□□□ 0.78
SNX3O60493 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SNX3O60493 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.92■□□□□ 0.78
SNX3O60493 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.92■□□□□ 0.78
SNX3O60493 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.92■□□□□ 0.78
SNX3O60493 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.92■□□□□ 0.78
SNX3O60493 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.92■□□□□ 0.78
SNX3O60493 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.92■□□□□ 0.78
SNX3O60493 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.92■□□□□ 0.78
SNX3O60493 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.92■□□□□ 0.78
SNX3O60493 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.92■□□□□ 0.78
SNX3O60493 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.92■□□□□ 0.78
SNX3O60493 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.92■□□□□ 0.78
SNX3O60493 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SNX3O60493 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 AC009237.3-201ENST00000393279 1427 ntBASIC19.92■□□□□ 0.78
SNX3O60493 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.92■□□□□ 0.78
SNX3O60493 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.92■□□□□ 0.78
SNX3O60493 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SNX3O60493 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SNX3O60493 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SNX3O60493 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SNX3O60493 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.91■□□□□ 0.78
SNX3O60493 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.91■□□□□ 0.78
SNX3O60493 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.91■□□□□ 0.78
SNX3O60493 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.91■□□□□ 0.78
SNX3O60493 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
SNX3O60493 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 AP004607.4-201ENST00000530158 1459 ntBASIC19.91■□□□□ 0.78
SNX3O60493 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX3O60493 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms