Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 KRT18P68-201ENST00000392293 1000 ntBASIC23.32■■□□□ 1.32
DDX41Q9UJV9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 AL589743.5-201ENST00000616611 1050 ntBASIC23.32■■□□□ 1.32
DDX41Q9UJV9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
DDX41Q9UJV9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 UNC93B5-201ENST00000530315 699 ntBASIC23.31■■□□□ 1.32
DDX41Q9UJV9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX41Q9UJV9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX41Q9UJV9 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 AC116050.2-201ENST00000612102 1779 ntBASIC23.29■■□□□ 1.32
DDX41Q9UJV9 CYP21A1P-202ENST00000354927 1481 ntBASIC23.29■■□□□ 1.32
DDX41Q9UJV9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX41Q9UJV9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX41Q9UJV9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX41Q9UJV9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 AC026366.1-201ENST00000488803 879 ntBASIC23.26■■□□□ 1.31
DDX41Q9UJV9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 AC006058.3-201ENST00000606217 1069 ntBASIC23.26■■□□□ 1.31
DDX41Q9UJV9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
DDX41Q9UJV9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms