Protein–RNA interactions for Protein: Q9NZU5

LMCD1, LIM and cysteine-rich domains protein 1, humanhuman

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1Q9NZU5 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.8■■□□□ 1.08
LMCD1Q9NZU5 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.8■■□□□ 1.08
LMCD1Q9NZU5 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LMCD1Q9NZU5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LMCD1Q9NZU5 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LMCD1Q9NZU5 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 AC006557.6-201ENST00000623071 864 ntBASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMCD1Q9NZU5 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 AL353807.1-201ENST00000427475 662 ntBASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LMCD1Q9NZU5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 AC116050.2-201ENST00000612102 1779 ntBASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 AF186192.3-201ENST00000583427 947 ntBASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 C11orf96-202ENST00000528572 1834 ntBASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.77■■□□□ 1.08
LMCD1Q9NZU5 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 AC087633.2-202ENST00000565166 1439 ntBASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 MIR6786-201ENST00000616843 113 ntBASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMCD1Q9NZU5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMCD1Q9NZU5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LMCD1Q9NZU5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.75■■□□□ 1.07
LMCD1Q9NZU5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
LMCD1Q9NZU5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMCD1Q9NZU5 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMCD1Q9NZU5 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMCD1Q9NZU5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.74■■□□□ 1.07
LMCD1Q9NZU5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LMCD1Q9NZU5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.74■■□□□ 1.07
LMCD1Q9NZU5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
LMCD1Q9NZU5 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LMCD1Q9NZU5 AC005521.1-201ENST00000393351 872 ntBASIC21.74■■□□□ 1.07
LMCD1Q9NZU5 PGM5P4-201ENST00000421970 445 ntBASIC21.74■■□□□ 1.07
LMCD1Q9NZU5 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.74■■□□□ 1.07
LMCD1Q9NZU5 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms