Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3BQ9H321 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3BQ9H321 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3BQ9H321 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VCX3BQ9H321 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3BQ9H321 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.34■□□□□ 0.69
VCX3BQ9H321 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3BQ9H321 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.34■□□□□ 0.69
VCX3BQ9H321 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.34■□□□□ 0.69
VCX3BQ9H321 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.33■□□□□ 0.69
VCX3BQ9H321 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
VCX3BQ9H321 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 AC093503.3-201ENST00000624917 2352 ntBASIC19.33■□□□□ 0.69
VCX3BQ9H321 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.33■□□□□ 0.69
VCX3BQ9H321 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3BQ9H321 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.33■□□□□ 0.68
VCX3BQ9H321 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
VCX3BQ9H321 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
VCX3BQ9H321 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3BQ9H321 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VCX3BQ9H321 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.32■□□□□ 0.68
VCX3BQ9H321 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
VCX3BQ9H321 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.32■□□□□ 0.68
VCX3BQ9H321 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.32■□□□□ 0.68
VCX3BQ9H321 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.32■□□□□ 0.68
VCX3BQ9H321 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VCX3BQ9H321 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.32■□□□□ 0.68
VCX3BQ9H321 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.32■□□□□ 0.68
VCX3BQ9H321 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3BQ9H321 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
VCX3BQ9H321 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.31■□□□□ 0.68
VCX3BQ9H321 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.31■□□□□ 0.68
VCX3BQ9H321 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.31■□□□□ 0.68
VCX3BQ9H321 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
VCX3BQ9H321 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.31■□□□□ 0.68
VCX3BQ9H321 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
VCX3BQ9H321 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.31■□□□□ 0.68
VCX3BQ9H321 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3BQ9H321 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
VCX3BQ9H321 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
VCX3BQ9H321 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.3■□□□□ 0.68
VCX3BQ9H321 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VCX3BQ9H321 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
VCX3BQ9H321 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.3■□□□□ 0.68
VCX3BQ9H321 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VCX3BQ9H321 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 AC129492.7-201ENST00000622992 756 ntBASIC19.3■□□□□ 0.68
VCX3BQ9H321 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCX3BQ9H321 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms