Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF111Q6ZNA4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.71■□□□□ 0.75
RNF111Q6ZNA4 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF111Q6ZNA4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 EEF1DP3-203ENST00000566025 782 ntBASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 AC053503.5-201ENST00000601508 636 ntBASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 AC104187.1-201ENST00000607510 612 ntBASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 AP000974.1-201ENST00000623909 2387 ntBASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 AC125437.2-201ENST00000625180 2167 ntBASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF111Q6ZNA4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 KRT19P1-201ENST00000405746 1186 ntBASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF111Q6ZNA4 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF111Q6ZNA4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 KRT18P61-201ENST00000585825 1298 ntBASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 AC004408.2-201ENST00000623613 2777 ntBASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 AC121338.2-201ENST00000622535 1744 ntBASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF111Q6ZNA4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.66■□□□□ 0.74
RNF111Q6ZNA4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
RNF111Q6ZNA4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RNF111Q6ZNA4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF111Q6ZNA4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF111Q6ZNA4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF111Q6ZNA4 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
RNF111Q6ZNA4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms