Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.53■□□□□ 0.88
HADHAP40939 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HADHAP40939 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HADHAP40939 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HADHAP40939 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HADHAP40939 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.53■□□□□ 0.88
HADHAP40939 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
HADHAP40939 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HADHAP40939 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
HADHAP40939 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.52■□□□□ 0.88
HADHAP40939 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.52■□□□□ 0.88
HADHAP40939 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.52■□□□□ 0.88
HADHAP40939 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.52■□□□□ 0.88
HADHAP40939 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.52■□□□□ 0.88
HADHAP40939 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 AC092437.1-201ENST00000624794 1048 ntBASIC20.52■□□□□ 0.88
HADHAP40939 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.52■□□□□ 0.88
HADHAP40939 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HADHAP40939 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
HADHAP40939 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
HADHAP40939 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.52■□□□□ 0.87
HADHAP40939 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.52■□□□□ 0.87
HADHAP40939 AL162377.1-201ENST00000618844 1793 ntBASIC20.51■□□□□ 0.87
HADHAP40939 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.51■□□□□ 0.87
HADHAP40939 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
HADHAP40939 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
HADHAP40939 CNN2P6-201ENST00000439038 900 ntBASIC20.51■□□□□ 0.87
HADHAP40939 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.51■□□□□ 0.87
HADHAP40939 IKBKGP1-201ENST00000612193 1073 ntBASIC20.51■□□□□ 0.87
HADHAP40939 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HADHAP40939 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.51■□□□□ 0.87
HADHAP40939 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HADHAP40939 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.51■□□□□ 0.87
HADHAP40939 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.51■□□□□ 0.87
HADHAP40939 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HADHAP40939 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HADHAP40939 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.5■□□□□ 0.87
HADHAP40939 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HADHAP40939 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.5■□□□□ 0.87
HADHAP40939 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.5■□□□□ 0.87
HADHAP40939 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.5■□□□□ 0.87
HADHAP40939 AC007322.1-201ENST00000426983 750 ntBASIC20.5■□□□□ 0.87
HADHAP40939 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.5■□□□□ 0.87
HADHAP40939 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.5■□□□□ 0.87
HADHAP40939 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.5■□□□□ 0.87
HADHAP40939 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
HADHAP40939 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
HADHAP40939 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
HADHAP40939 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HADHAP40939 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.49■□□□□ 0.87
HADHAP40939 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.49■□□□□ 0.87
HADHAP40939 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
HADHAP40939 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.49■□□□□ 0.87
HADHAP40939 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.49■□□□□ 0.87
HADHAP40939 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HADHAP40939 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
HADHAP40939 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms