Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.79■□□□□ 0.44
COL8A1P27658 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL8A1P27658 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL8A1P27658 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
COL8A1P27658 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
COL8A1P27658 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL8A1P27658 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.79■□□□□ 0.44
COL8A1P27658 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.79■□□□□ 0.44
COL8A1P27658 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL8A1P27658 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL8A1P27658 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL8A1P27658 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL8A1P27658 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 AC079834.2-201ENST00000609776 1949 ntBASIC17.78■□□□□ 0.44
COL8A1P27658 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.78■□□□□ 0.44
COL8A1P27658 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.78■□□□□ 0.44
COL8A1P27658 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.78■□□□□ 0.44
COL8A1P27658 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 AL390719.1-204ENST00000412397 1219 ntBASIC17.78■□□□□ 0.44
COL8A1P27658 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.78■□□□□ 0.44
COL8A1P27658 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.78■□□□□ 0.44
COL8A1P27658 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.78■□□□□ 0.44
COL8A1P27658 AC010203.1-204ENST00000548782 407 ntBASIC17.78■□□□□ 0.44
COL8A1P27658 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.78■□□□□ 0.44
COL8A1P27658 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.78■□□□□ 0.44
COL8A1P27658 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL8A1P27658 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.78■□□□□ 0.44
COL8A1P27658 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL8A1P27658 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL8A1P27658 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL8A1P27658 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL8A1P27658 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL8A1P27658 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL8A1P27658 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL8A1P27658 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL8A1P27658 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL8A1P27658 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.77■□□□□ 0.44
COL8A1P27658 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL8A1P27658 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.77■□□□□ 0.44
COL8A1P27658 NUDT16P1-203ENST00000513809 620 ntBASIC17.77■□□□□ 0.44
COL8A1P27658 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.77■□□□□ 0.44
COL8A1P27658 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL8A1P27658 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.77■□□□□ 0.44
COL8A1P27658 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
COL8A1P27658 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.77■□□□□ 0.44
COL8A1P27658 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
COL8A1P27658 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
COL8A1P27658 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL8A1P27658 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL8A1P27658 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.76■□□□□ 0.43
COL8A1P27658 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.76■□□□□ 0.43
COL8A1P27658 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 AC092068.2-201ENST00000590491 1708 ntBASIC17.76■□□□□ 0.43
COL8A1P27658 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL8A1P27658 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
COL8A1P27658 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.76■□□□□ 0.43
COL8A1P27658 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.76■□□□□ 0.43
COL8A1P27658 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.76■□□□□ 0.43
COL8A1P27658 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.76■□□□□ 0.43
COL8A1P27658 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
COL8A1P27658 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.76■□□□□ 0.43
COL8A1P27658 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 AC073195.1-201ENST00000607241 877 ntBASIC17.76■□□□□ 0.43
COL8A1P27658 AC006011.2-201ENST00000621313 1158 ntBASIC17.76■□□□□ 0.43
COL8A1P27658 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL8A1P27658 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.76■□□□□ 0.43
COL8A1P27658 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.75■□□□□ 0.43
COL8A1P27658 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 AC026396.1-201ENST00000419388 421 ntBASIC17.75■□□□□ 0.43
COL8A1P27658 KRT16P5-201ENST00000455284 522 ntBASIC17.75■□□□□ 0.43
COL8A1P27658 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.75■□□□□ 0.43
COL8A1P27658 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.75■□□□□ 0.43
COL8A1P27658 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.75■□□□□ 0.43
COL8A1P27658 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL8A1P27658 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.75■□□□□ 0.43
COL8A1P27658 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.75■□□□□ 0.43
COL8A1P27658 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.75■□□□□ 0.43
COL8A1P27658 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL8A1P27658 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms