Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV40A0A0B4J280 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 AP006294.2-201ENST00000641667 209 ntBASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV40A0A0B4J280 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 C1QBPP2-201ENST00000528754 825 ntBASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 AC069544.1-201ENST00000609399 999 ntBASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 FAM197Y4-202ENST00000622692 608 ntBASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV40A0A0B4J280 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 EFS-203ENST00000429593 2610 ntTSL 2 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 AL049796.1-201ENST00000565336 1766 ntBASIC16.54■□□□□ 0.24
TRAV40A0A0B4J280 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV40A0A0B4J280 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms