Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 AC010525.1-201ENST00000585559 441 ntBASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 AL512408.1-201ENST00000569378 2000 ntBASIC19.07■□□□□ 0.64
COMMD3-BMI1R4GMX3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 MIR4466-201ENST00000606121 54 ntBASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 AL032819.2-201ENST00000624543 2162 ntBASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COMMD3-BMI1R4GMX3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 SERBP1P1-201ENST00000396021 1160 ntBASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 AC010141.3-201ENST00000456659 717 ntBASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 AC120498.9-201ENST00000339021 3867 ntBASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.05■□□□□ 0.64
COMMD3-BMI1R4GMX3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 AL138724.1-201ENST00000606771 1088 ntBASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 SYT6-210ENST00000641643 1587 ntBASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 NOC2LP1-202ENST00000452600 2235 ntBASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COMMD3-BMI1R4GMX3 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
COMMD3-BMI1R4GMX3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COMMD3-BMI1R4GMX3 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COMMD3-BMI1R4GMX3 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.03■□□□□ 0.64
COMMD3-BMI1R4GMX3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COMMD3-BMI1R4GMX3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COMMD3-BMI1R4GMX3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
COMMD3-BMI1R4GMX3 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COMMD3-BMI1R4GMX3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms