Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.39■□□□□ 0.69
PIF1Q9H611 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PIF1Q9H611 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.39■□□□□ 0.69
PIF1Q9H611 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PIF1Q9H611 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PIF1Q9H611 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.39■□□□□ 0.69
PIF1Q9H611 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PIF1Q9H611 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PIF1Q9H611 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PIF1Q9H611 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PIF1Q9H611 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PIF1Q9H611 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.38■□□□□ 0.69
PIF1Q9H611 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.38■□□□□ 0.69
PIF1Q9H611 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.38■□□□□ 0.69
PIF1Q9H611 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.38■□□□□ 0.69
PIF1Q9H611 AC092720.2-201ENST00000602388 1665 ntBASIC19.38■□□□□ 0.69
PIF1Q9H611 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.38■□□□□ 0.69
PIF1Q9H611 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
PIF1Q9H611 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PIF1Q9H611 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.37■□□□□ 0.69
PIF1Q9H611 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PIF1Q9H611 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PIF1Q9H611 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PIF1Q9H611 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
PIF1Q9H611 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.37■□□□□ 0.69
PIF1Q9H611 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.37■□□□□ 0.69
PIF1Q9H611 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PIF1Q9H611 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.37■□□□□ 0.69
PIF1Q9H611 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.37■□□□□ 0.69
PIF1Q9H611 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
PIF1Q9H611 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.36■□□□□ 0.69
PIF1Q9H611 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
PIF1Q9H611 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.36■□□□□ 0.69
PIF1Q9H611 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.36■□□□□ 0.69
PIF1Q9H611 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.36■□□□□ 0.69
PIF1Q9H611 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.36■□□□□ 0.69
PIF1Q9H611 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.36■□□□□ 0.69
PIF1Q9H611 EEF1DP3-203ENST00000566025 782 ntBASIC19.36■□□□□ 0.69
PIF1Q9H611 AC053503.5-201ENST00000601508 636 ntBASIC19.36■□□□□ 0.69
PIF1Q9H611 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PIF1Q9H611 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PIF1Q9H611 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.36■□□□□ 0.69
PIF1Q9H611 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PIF1Q9H611 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.35■□□□□ 0.69
PIF1Q9H611 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.35■□□□□ 0.69
PIF1Q9H611 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.35■□□□□ 0.69
PIF1Q9H611 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.35■□□□□ 0.69
PIF1Q9H611 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PIF1Q9H611 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.35■□□□□ 0.69
PIF1Q9H611 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.35■□□□□ 0.69
PIF1Q9H611 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PIF1Q9H611 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.35■□□□□ 0.69
PIF1Q9H611 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
PIF1Q9H611 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PIF1Q9H611 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
PIF1Q9H611 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PIF1Q9H611 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PIF1Q9H611 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PIF1Q9H611 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.34■□□□□ 0.69
PIF1Q9H611 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.34■□□□□ 0.69
PIF1Q9H611 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PIF1Q9H611 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
PIF1Q9H611 TCF3P1-201ENST00000423021 1937 ntBASIC19.34■□□□□ 0.69
PIF1Q9H611 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.34■□□□□ 0.69
PIF1Q9H611 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.34■□□□□ 0.69
PIF1Q9H611 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.34■□□□□ 0.69
PIF1Q9H611 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.34■□□□□ 0.69
PIF1Q9H611 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms